38 homologs were found in PanDaTox collection
for query gene Svir_05380 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013159  Svir_05380  succinate dehydrogenase subunit C  100 
 
 		 116 aa  233  7e-61  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.833154  normal  1 
 
 
-
 
NC_013093  Amir_6462  succinate dehydrogenase, cytochrome b556 subunit  79.82 
 
 		 140 aa  196  1.0000000000000001e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
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NC_013235  Namu_1311  succinate dehydrogenase, cytochrome b556 subunit  76.52 
 
 		 143 aa  191  3e-48  Nakamurella multipartita DSM 44233  Bacteria  normal  0.454603  normal  1 
 
 
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NC_008146  Mmcs_1230  succinate dehydrogenase, cytochrome b subunit  76.29 
 
 		 142 aa  159  1e-38  Mycobacterium sp. MCS  Bacteria  normal  0.490436  n/a   
 
 
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NC_008705  Mkms_1247  succinate dehydrogenase, cytochrome b subunit  76.29 
 
 		 142 aa  159  1e-38  Mycobacterium sp. KMS  Bacteria  normal  0.59332  normal  1 
 
 
-
 
NC_009077  Mjls_1256  succinate dehydrogenase, cytochrome b subunit  76.29 
 
 		 142 aa  159  1e-38  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_0772  succinate dehydrogenase, cytochrome b556 subunit  61.95 
 
 		 132 aa  155  2e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.200445 
 
 
-
 
NC_013441  Gbro_1778  succinate dehydrogenase, cytochrome b556 subunit  62.83 
 
 		 139 aa  152  2e-36  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_0681  succinate dehydrogenase, cytochrome b subunit  62.28 
 
 		 131 aa  151  2.9999999999999998e-36  Frankia sp. CcI3  Bacteria  normal  0.414891  normal  0.0350115 
 
 
-
 
NC_008726  Mvan_1589  succinate dehydrogenase, cytochrome b subunit  71.13 
 
 		 142 aa  149  1e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.603867  normal  0.335137 
 
 
-
 
NC_009338  Mflv_4844  succinate dehydrogenase, cytochrome b subunit  66.67 
 
 		 142 aa  147  6e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_13347  succinate dehydrogenase cytochrome B-556 subunit sdhC  66.67 
 
 		 144 aa  144  3e-34  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.262183 
 
 
-
 
NC_013521  Sked_25800  succinate dehydrogenase subunit C  61.4 
 
 		 126 aa  142  1e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.180508  normal  0.930468 
 
 
-
 
NC_009664  Krad_3952  Succinate dehydrogenase cytochrome b556 subunit  58.04 
 
 		 139 aa  142  2e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.013264 
 
 
-
 
NC_011886  Achl_1204  succinate dehydrogenase, cytochrome b556 subunit  64.95 
 
 		 126 aa  140  7e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000580451 
 
 
-
 
NC_012669  Bcav_2950  succinate dehydrogenase, cytochrome b556 subunit  59.48 
 
 		 142 aa  139  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  hitchhiker  0.000313262 
 
 
-
 
NC_008541  Arth_1131  succinate dehydrogenase, cytochrome b subunit  59.65 
 
 		 126 aa  138  3e-32  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_013174  Jden_0821  succinate dehydrogenase, cytochrome b556 subunit  58.77 
 
 		 126 aa  137  4.999999999999999e-32  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014158  Tpau_0967  succinate dehydrogenase, cytochrome b556 subunit  64 
 
 		 134 aa  136  8.999999999999999e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.226571  n/a   
 
 
-
 
NC_013530  Xcel_0990  succinate dehydrogenase, cytochrome b556 subunit  59.65 
 
 		 126 aa  134  5e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.051901  n/a   
 
 
-
 
NC_014151  Cfla_1017  succinate dehydrogenase, cytochrome b556 subunit  58.77 
 
 		 132 aa  130  6e-30  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012803  Mlut_04850  succinate dehydrogenase, cytochrome b556 subunit  57.73 
 
 		 134 aa  122  1e-27  Micrococcus luteus NCTC 2665  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_21310  succinate dehydrogenase subunit C  65.52 
 
 		 125 aa  122  1e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0787  succinate dehydrogenase, cytochrome b556 subunit  44.44 
 
 		 119 aa  100  5e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013124  Afer_0188  succinate dehydrogenase, cytochrome b556 subunit  39.42 
 
 		 138 aa  90.9  6e-18  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0889  succinate dehydrogenase, cytochrome b subunit  31.43 
 
 		 118 aa  69.3  0.00000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.891271  normal  0.65854 
 
 
-
 
NC_010831  Cphamn1_2516  succinate dehydrogenase, cytochrome b556 subunit  30.3 
 
 		 154 aa  63.9  0.0000000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_0208  succinate dehydrogenase, cytochrome b556 subunit  34.78 
 
 		 136 aa  62  0.000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_011059  Paes_2257  succinate dehydrogenase, cytochrome b556 subunit  36.36 
 
 		 144 aa  62  0.000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0160285  normal  1 
 
 
-
 
NC_014212  Mesil_1435  succinate dehydrogenase, cytochrome b556 subunit  28.44 
 
 		 123 aa  55.1  0.0000003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.362976  normal  1 
 
 
-
 
NC_013158  Huta_2835  succinate dehydrogenase, cytochrome b556 subunit  35.62 
 
 		 129 aa  54.3  0.0000005  Halorhabdus utahensis DSM 12940  Archaea  normal  0.178148  n/a   
 
 
-
 
NC_013743  Htur_0933  succinate dehydrogenase, cytochrome b556 subunit  34.25 
 
 		 131 aa  52.4  0.000002  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013922  Nmag_3125  succinate dehydrogenase, cytochrome b556 subunit  35.29 
 
 		 143 aa  50.1  0.00001  Natrialba magadii ATCC 43099  Archaea  normal  1  n/a   
 
 
-
 
NC_013202  Hmuk_2076  succinate dehydrogenase, cytochrome b556 subunit  28.43 
 
 		 131 aa  47.8  0.00006  Halomicrobium mukohataei DSM 12286  Archaea  normal  1  normal  1 
 
 
-
 
NC_007494  RSP_3148  putative succinate dehydrogenase cytochrome b-556 subunit  30.38 
 
 		 114 aa  42.7  0.002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.80265  n/a   
 
 
-
 
NC_009050  Rsph17029_3885  succinate dehydrogenase, cytochrome b subunit  30.38 
 
 		 114 aa  42.7  0.002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0570697 
 
 
-
 
NC_007802  Jann_3968  succinate dehydrogenase subunit C  29.11 
 
 		 114 aa  41.2  0.005  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.617218 
 
 
-
 
NC_008228  Patl_1795  succinate dehydrogenase, cytochrome b subunit  28.57 
 
 		 124 aa  40.4  0.009  Pseudoalteromonas atlantica T6c  Bacteria  decreased coverage  0.000000214378  n/a   
 
 
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