56 homologs were found in PanDaTox collection
for query gene Francci3_0681 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007777  Francci3_0681  succinate dehydrogenase, cytochrome b subunit  100 
 
 		 131 aa  265  1e-70  Frankia sp. CcI3  Bacteria  normal  0.414891  normal  0.0350115 
 
 
-
 
NC_013235  Namu_1311  succinate dehydrogenase, cytochrome b556 subunit  65.12 
 
 		 143 aa  181  3e-45  Nakamurella multipartita DSM 44233  Bacteria  normal  0.454603  normal  1 
 
 
-
 
NC_013131  Caci_0772  succinate dehydrogenase, cytochrome b556 subunit  64.29 
 
 		 132 aa  178  2e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.200445 
 
 
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NC_013521  Sked_25800  succinate dehydrogenase subunit C  66.67 
 
 		 126 aa  178  2e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.180508  normal  0.930468 
 
 
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NC_013530  Xcel_0990  succinate dehydrogenase, cytochrome b556 subunit  65.04 
 
 		 126 aa  173  6e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.051901  n/a   
 
 
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NC_013093  Amir_6462  succinate dehydrogenase, cytochrome b556 subunit  63.93 
 
 		 140 aa  169  1e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013174  Jden_0821  succinate dehydrogenase, cytochrome b556 subunit  61.79 
 
 		 126 aa  167  3e-41  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008726  Mvan_1589  succinate dehydrogenase, cytochrome b subunit  65.81 
 
 		 142 aa  167  5e-41  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.603867  normal  0.335137 
 
 
-
 
NC_009338  Mflv_4844  succinate dehydrogenase, cytochrome b subunit  65.81 
 
 		 142 aa  166  1e-40  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008541  Arth_1131  succinate dehydrogenase, cytochrome b subunit  61.34 
 
 		 126 aa  163  5.9999999999999996e-40  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_008146  Mmcs_1230  succinate dehydrogenase, cytochrome b subunit  62.39 
 
 		 142 aa  162  1.0000000000000001e-39  Mycobacterium sp. MCS  Bacteria  normal  0.490436  n/a   
 
 
-
 
NC_011886  Achl_1204  succinate dehydrogenase, cytochrome b556 subunit  62.18 
 
 		 126 aa  162  1.0000000000000001e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000580451 
 
 
-
 
NC_008705  Mkms_1247  succinate dehydrogenase, cytochrome b subunit  62.39 
 
 		 142 aa  162  1.0000000000000001e-39  Mycobacterium sp. KMS  Bacteria  normal  0.59332  normal  1 
 
 
-
 
NC_009077  Mjls_1256  succinate dehydrogenase, cytochrome b subunit  62.39 
 
 		 142 aa  162  1.0000000000000001e-39  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013441  Gbro_1778  succinate dehydrogenase, cytochrome b556 subunit  63.39 
 
 		 139 aa  161  2.0000000000000002e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_1017  succinate dehydrogenase, cytochrome b556 subunit  63.11 
 
 		 132 aa  160  4.0000000000000004e-39  Cellulomonas flavigena DSM 20109  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_13347  succinate dehydrogenase cytochrome B-556 subunit sdhC  59.02 
 
 		 144 aa  158  2e-38  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.262183 
 
 
-
 
NC_012669  Bcav_2950  succinate dehydrogenase, cytochrome b556 subunit  60.68 
 
 		 142 aa  155  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  hitchhiker  0.000313262 
 
 
-
 
NC_009664  Krad_3952  Succinate dehydrogenase cytochrome b556 subunit  57.85 
 
 		 139 aa  154  6e-37  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.013264 
 
 
-
 
NC_013172  Bfae_21310  succinate dehydrogenase subunit C  60.16 
 
 		 125 aa  152  1e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_05380  succinate dehydrogenase subunit C  62.28 
 
 		 116 aa  151  2.9999999999999998e-36  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.833154  normal  1 
 
 
-
 
NC_012803  Mlut_04850  succinate dehydrogenase, cytochrome b556 subunit  55.83 
 
 		 134 aa  140  7e-33  Micrococcus luteus NCTC 2665  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_0967  succinate dehydrogenase, cytochrome b556 subunit  53.57 
 
 		 134 aa  138  1.9999999999999998e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.226571  n/a   
 
 
-
 
NC_013525  Tter_0787  succinate dehydrogenase, cytochrome b556 subunit  49.11 
 
 		 119 aa  119  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013124  Afer_0188  succinate dehydrogenase, cytochrome b556 subunit  36.67 
 
 		 138 aa  90.5  6e-18  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0889  succinate dehydrogenase, cytochrome b subunit  37.62 
 
 		 118 aa  78.6  0.00000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.891271  normal  0.65854 
 
 
-
 
NC_013501  Rmar_0208  succinate dehydrogenase, cytochrome b556 subunit  38.32 
 
 		 136 aa  70.5  0.000000000008  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_1435  succinate dehydrogenase, cytochrome b556 subunit  34.96 
 
 		 123 aa  68.2  0.00000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  0.362976  normal  1 
 
 
-
 
NC_011059  Paes_2257  succinate dehydrogenase, cytochrome b556 subunit  38.75 
 
 		 144 aa  67.4  0.00000000006  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0160285  normal  1 
 
 
-
 
NC_013743  Htur_0933  succinate dehydrogenase, cytochrome b556 subunit  33.96 
 
 		 131 aa  66.6  0.0000000001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013158  Huta_2835  succinate dehydrogenase, cytochrome b556 subunit  37.96 
 
 		 129 aa  66.6  0.0000000001  Halorhabdus utahensis DSM 12940  Archaea  normal  0.178148  n/a   
 
 
-
 
NC_010831  Cphamn1_2516  succinate dehydrogenase, cytochrome b556 subunit  29.31 
 
 		 154 aa  62.8  0.000000002  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013922  Nmag_3125  succinate dehydrogenase, cytochrome b556 subunit  33.63 
 
 		 143 aa  61.6  0.000000003  Natrialba magadii ATCC 43099  Archaea  normal  1  n/a   
 
 
-
 
NC_013202  Hmuk_2076  succinate dehydrogenase, cytochrome b556 subunit  30.69 
 
 		 131 aa  58.5  0.00000003  Halomicrobium mukohataei DSM 12286  Archaea  normal  1  normal  1 
 
 
-
 
NC_009440  Msed_1113  succinate dehydrogenase, cytochrome b subunit  28.44 
 
 		 133 aa  48.1  0.00003  Metallosphaera sedula DSM 5348  Archaea  normal  0.405795  normal  1 
 
 
-
 
NC_012029  Hlac_1987  succinate dehydrogenase, cytochrome b556 subunit  34.94 
 
 		 142 aa  47.8  0.00006  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.241729  normal  0.34288 
 
 
-
 
NC_009656  PSPA7_3693  succinate dehydrogenase, cytochrome b556 subunit  34.02 
 
 		 128 aa  44.7  0.0004  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_44060  succinate dehydrogenase, cytochrome b556 subunit  32.99 
 
 		 128 aa  44.7  0.0005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0786  Succinate dehydrogenase hydrophobic anchor subunit-like protein  30 
 
 		 126 aa  42.4  0.002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011094  SeSA_A0888  succinate dehydrogenase cytochrome b556 large membrane subunit  32.32 
 
 		 134 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.171127  normal  0.76264 
 
 
-
 
NC_011205  SeD_A0826  succinate dehydrogenase cytochrome b556 large membrane subunit  32.32 
 
 		 134 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B0765  succinate dehydrogenase cytochrome b556 large membrane subunit  32.32 
 
 		 134 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.463239  n/a   
 
 
-
 
NC_011083  SeHA_C0855  succinate dehydrogenase cytochrome b556 large membrane subunit  32.32 
 
 		 134 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  hitchhiker  0.000446892 
 
 
-
 
NC_011080  SNSL254_A0791  succinate dehydrogenase cytochrome b556 large membrane subunit  32.32 
 
 		 134 aa  42.7  0.002  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.51944  normal  0.101074 
 
 
-
 
NC_007802  Jann_3968  succinate dehydrogenase subunit C  30.38 
 
 		 114 aa  42.4  0.002  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.617218 
 
 
-
 
NC_004578  PSPTO_2195  succinate dehydrogenase, cytochrome b556 subunit  34.29 
 
 		 124 aa  42.7  0.002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.151249  n/a   
 
 
-
 
NC_007005  Psyr_2005  succinate dehydrogenase, cytochrome b subunit  34.29 
 
 		 124 aa  41.6  0.004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0924289  normal  0.135174 
 
 
-
 
NC_010501  PputW619_3516  succinate dehydrogenase, cytochrome b556 subunit  30.43 
 
 		 128 aa  41.2  0.005  Pseudomonas putida W619  Bacteria  normal  0.517036  normal  1 
 
 
-
 
NC_002947  PP_4193  succinate dehydrogenase, cytochrome b556 subunit  30.43 
 
 		 128 aa  40.8  0.006  Pseudomonas putida KT2440  Bacteria  normal  0.530712  normal  1 
 
 
-
 
NC_010322  PputGB1_3764  succinate dehydrogenase, cytochrome b556 subunit  30.43 
 
 		 128 aa  40.8  0.006  Pseudomonas putida GB-1  Bacteria  normal  0.415406  normal  1 
 
 
-
 
NC_009512  Pput_1661  succinate dehydrogenase, cytochrome b556 subunit  30.43 
 
 		 128 aa  40.8  0.006  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_2507  succinate dehydrogenase subunit C  34.25 
 
 		 128 aa  40.8  0.006  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.305741 
 
 
-
 
NC_011886  Achl_1203  putative succinate dehydrogenase, membrane subunit (SdhD)  25 
 
 		 153 aa  40.4  0.007  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000167837 
 
 
-
 
NC_009720  Xaut_1967  succinate dehydrogenase cytochrome b556 subunit  31.25 
 
 		 133 aa  40.8  0.007  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.124029 
 
 
-
 
NC_007492  Pfl01_1610  succinate dehydrogenase subunit C  27.96 
 
 		 124 aa  40.8  0.007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.467782  normal  0.340468 
 
 
-
 
NC_008228  Patl_1795  succinate dehydrogenase, cytochrome b subunit  32.88 
 
 		 124 aa  40.4  0.008  Pseudoalteromonas atlantica T6c  Bacteria  decreased coverage  0.000000214378  n/a   
 
 
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