35 homologs were found in PanDaTox collection
for query gene Jann_3968 on replicon NC_007802
Organism: Jannaschia sp. CCS1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007802  Jann_3968  succinate dehydrogenase subunit C  100 
 
 		 114 aa  224  2e-58  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.617218 
 
 
-
 
NC_007494  RSP_3148  putative succinate dehydrogenase cytochrome b-556 subunit  63.16 
 
 		 114 aa  144  5e-34  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.80265  n/a   
 
 
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NC_009050  Rsph17029_3885  succinate dehydrogenase, cytochrome b subunit  63.16 
 
 		 114 aa  144  5e-34  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.0570697 
 
 
-
 
NC_010510  Mrad2831_5987  succinate dehydrogenase cytochrome b subunit  43.27 
 
 		 125 aa  83.6  9e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.340501  normal  0.95264 
 
 
-
 
NC_011892  Mnod_8671  succinate dehydrogenase, cytochrome b subunit  47.31 
 
 		 115 aa  82  0.000000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008786  Veis_2513  succinate dehydrogenase, cytochrome b subunit  48.84 
 
 		 116 aa  73.9  0.0000000000007  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.159074  normal  1 
 
 
-
 
NC_012792  Vapar_5616  succinate dehydrogenase, cytochrome b subunit  52.33 
 
 		 114 aa  72.4  0.000000000002  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_011059  Paes_2257  succinate dehydrogenase, cytochrome b556 subunit  35.11 
 
 		 144 aa  62  0.000000002  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0160285  normal  1 
 
 
-
 
NC_013441  Gbro_1778  succinate dehydrogenase, cytochrome b556 subunit  34.88 
 
 		 139 aa  53.5  0.0000008  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_0208  succinate dehydrogenase, cytochrome b556 subunit  39.02 
 
 		 136 aa  53.1  0.000001  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_1631  succinate dehydrogenase subunit C  32.32 
 
 		 131 aa  48.9  0.00003  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000702193  normal  1 
 
 
-
 
NC_008322  Shewmr7_1706  succinate dehydrogenase subunit C  32.32 
 
 		 131 aa  48.9  0.00003  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000208807  normal  1 
 
 
-
 
NC_008577  Shewana3_1706  succinate dehydrogenase subunit C  32.32 
 
 		 131 aa  48.9  0.00003  Shewanella sp. ANA-3  Bacteria  normal  0.0121906  normal  0.572732 
 
 
-
 
NC_004347  SO_1927  succinate dehydrogenase, cytochrome b556 subunit  31.31 
 
 		 131 aa  47  0.00008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2632  succinate dehydrogenase, cytochrome b556 subunit  31.11 
 
 		 131 aa  47  0.00009  Shewanella baltica OS195  Bacteria  hitchhiker  0.000174207  normal  0.11492 
 
 
-
 
NC_014158  Tpau_0967  succinate dehydrogenase, cytochrome b556 subunit  28.89 
 
 		 134 aa  45.4  0.0002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.226571  n/a   
 
 
-
 
NC_009438  Sputcn32_2273  succinate dehydrogenase, cytochrome b subunit  30.3 
 
 		 131 aa  45.4  0.0002  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.0000969939  n/a   
 
 
-
 
NC_009052  Sbal_2519  succinate dehydrogenase, cytochrome b subunit  30 
 
 		 131 aa  45.4  0.0003  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000447575  n/a   
 
 
-
 
NC_011663  Sbal223_1832  succinate dehydrogenase, cytochrome b556 subunit  30 
 
 		 131 aa  45.4  0.0003  Shewanella baltica OS223  Bacteria  hitchhiker  0.000145214  normal  0.191476 
 
 
-
 
NC_009665  Shew185_2512  succinate dehydrogenase cytochrome b556 subunit  30 
 
 		 131 aa  45.1  0.0004  Shewanella baltica OS185  Bacteria  decreased coverage  0.00000726446  n/a   
 
 
-
 
NC_009664  Krad_3952  Succinate dehydrogenase cytochrome b556 subunit  31.65 
 
 		 139 aa  44.7  0.0005  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.013264 
 
 
-
 
NC_010831  Cphamn1_2516  succinate dehydrogenase, cytochrome b556 subunit  37.04 
 
 		 154 aa  43.9  0.0007  Chlorobium phaeobacteroides BS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_1833  succinate dehydrogenase, cytochrome b556 subunit  28.89 
 
 		 124 aa  42.7  0.002  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00848853  normal  0.0380637 
 
 
-
 
NC_008726  Mvan_1589  succinate dehydrogenase, cytochrome b subunit  29.7 
 
 		 142 aa  42.7  0.002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.603867  normal  0.335137 
 
 
-
 
NC_013174  Jden_0821  succinate dehydrogenase, cytochrome b556 subunit  30.38 
 
 		 126 aa  42.4  0.002  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_0681  succinate dehydrogenase, cytochrome b subunit  30.38 
 
 		 131 aa  42.4  0.002  Frankia sp. CcI3  Bacteria  normal  0.414891  normal  0.0350115 
 
 
-
 
NC_009565  TBFG_13347  succinate dehydrogenase cytochrome B-556 subunit sdhC  30.23 
 
 		 144 aa  42  0.003  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.262183 
 
 
-
 
NC_012669  Bcav_2950  succinate dehydrogenase, cytochrome b556 subunit  29.11 
 
 		 142 aa  41.6  0.003  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  hitchhiker  0.000313262 
 
 
-
 
NC_008700  Sama_1423  succinate dehydrogenase, cytochrome b556 subunit  28.12 
 
 		 131 aa  42  0.003  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000106154  normal  1 
 
 
-
 
NC_008345  Sfri_2347  succinate dehydrogenase, cytochrome b subunit  28.28 
 
 		 131 aa  41.6  0.004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.270921  n/a   
 
 
-
 
NC_009338  Mflv_4844  succinate dehydrogenase, cytochrome b subunit  30.23 
 
 		 142 aa  41.2  0.005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_1784  succinate dehydrogenase cytochrome b556 subunit  27.66 
 
 		 124 aa  41.2  0.005  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000397756  n/a   
 
 
-
 
NC_013159  Svir_05380  succinate dehydrogenase subunit C  29.11 
 
 		 116 aa  41.2  0.005  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.833154  normal  1 
 
 
-
 
NC_012917  PC1_1232  succinate dehydrogenase cytochrome b556 large membrane subunit  32 
 
 		 129 aa  40.8  0.006  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013172  Bfae_21310  succinate dehydrogenase subunit C  30.38 
 
 		 125 aa  40.4  0.009  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
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