More than 300 homologs were found in PanDaTox collection
for query gene DvMF_2352 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_2352  Holliday junction resolvase YqgF  100 
 
 
142 aa  285  2e-76  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.209159 
 
 
-
 
NC_008751  Dvul_0307  Holliday junction resolvase YqgF  74.65 
 
 
142 aa  210  5.999999999999999e-54  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0314  Holliday junction resolvase YqgF  73.76 
 
 
144 aa  207  3e-53  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0031  Holliday junction resolvase YqgF  57.14 
 
 
140 aa  138  1.9999999999999998e-32  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  50.76 
 
 
133 aa  130  7.999999999999999e-30  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  48.48 
 
 
142 aa  116  9e-26  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  42.31 
 
 
146 aa  97.1  8e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  41.35 
 
 
137 aa  91.7  3e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.52249 
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  38.35 
 
 
146 aa  82  0.000000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2580  Holliday junction resolvase-like protein  37.69 
 
 
145 aa  82.4  0.000000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.0863234 
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  36.69 
 
 
151 aa  82.8  0.000000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal 
 
 
-
 
NC_011891  A2cp1_2727  Holliday junction resolvase-like protein  40.43 
 
 
137 aa  81.6  0.000000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2633  Holliday junction resolvase-like protein  39.72 
 
 
137 aa  80.5  0.000000000000007  Anaeromyxobacter sp. K  Bacteria  normal  0.854397  n/a   
 
 
-
 
NC_012669  Bcav_2015  Holliday junction resolvase YqgF  38.17 
 
 
163 aa  80.1  0.000000000000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.756916  normal  0.07881 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  35.88 
 
 
153 aa  79  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_010551  BamMC406_0755  Holliday junction resolvase-like protein  39.1 
 
 
149 aa  78.6  0.00000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.302865  normal  0.26532 
 
 
-
 
NC_008390  Bamb_0738  Holliday junction resolvase-like protein  39.1 
 
 
149 aa  78.6  0.00000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.89107  n/a   
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  39.01 
 
 
137 aa  77.8  0.00000000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  38.69 
 
 
149 aa  78.2  0.00000000000004  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010655  Amuc_1191  Holliday junction resolvase YqgF  35.88 
 
 
141 aa  77  0.00000000000007  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.0000237997  normal 
 
 
-
 
NC_009654  Mmwyl1_0540  Holliday junction resolvase YqgF  35.66 
 
 
156 aa  76.3  0.0000000000001  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4379  Holliday junction resolvase-like protein  32.31 
 
 
149 aa  76.6  0.0000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.556882  normal  0.251804 
 
 
-
 
NC_009953  Sare_1820  Holliday junction resolvase YqgF  40.71 
 
 
153 aa  75.9  0.0000000000002  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0000610168 
 
 
-
 
NC_007510  Bcep18194_A3963  Holliday junction resolvase-like protein  38.35 
 
 
149 aa  75.9  0.0000000000002  Burkholderia sp. 383  Bacteria  normal  normal  0.539384 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  37.04 
 
 
202 aa  75.9  0.0000000000002  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  33.08 
 
 
140 aa  75.5  0.0000000000003  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_010508  Bcenmc03_0836  Holliday junction resolvase-like protein  38.35 
 
 
149 aa  75.1  0.0000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  hitchhiker  0.00221177 
 
 
-
 
NC_008060  Bcen_0383  Holliday junction resolvase-like protein  38.35 
 
 
149 aa  75.1  0.0000000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0865  Holliday junction resolvase-like protein  38.35 
 
 
149 aa  75.1  0.0000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  37.59 
 
 
149 aa  74.7  0.0000000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.159244 
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  37.14 
 
 
150 aa  74.7  0.0000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal 
 
 
-
 
NC_009380  Strop_1829  Holliday junction resolvase YqgF  40 
 
 
153 aa  74.7  0.0000000000005  Salinispora tropica CNB-440  Bacteria  normal  0.0551936  normal 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  37.78 
 
 
182 aa  74.3  0.0000000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_011729  PCC7424_3098  Holliday junction resolvase-like protein  37.41 
 
 
151 aa  74.3  0.0000000000006  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_0615  putative endonuclease for recombination  35.14 
 
 
152 aa  73.9  0.0000000000006  Bifidobacterium longum DJO10A  Bacteria  normal  0.105236  n/a   
 
 
-
 
NC_011726  PCC8801_1942  Holliday junction resolvase-like protein  36.76 
 
 
139 aa  73.6  0.0000000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  35.88 
 
 
222 aa  73.6  0.0000000000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_013161  Cyan8802_1969  Holliday junction resolvase-like protein  36.76 
 
 
139 aa  73.6  0.0000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0212683 
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  40.74 
 
 
176 aa  73.6  0.0000000000009  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  33.09 
 
 
139 aa  72.8  0.000000000001  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  34.53 
 
 
142 aa  73.2  0.000000000001  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal 
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  37.68 
 
 
163 aa  72.8  0.000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  33.85 
 
 
158 aa  72.8  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_007604  Synpcc7942_2398  Holliday junction resolvase-like protein  34.62 
 
 
149 aa  72.8  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0366153  hitchhiker  0.00151496 
 
 
-
 
NC_011206  Lferr_2668  Holliday junction resolvase YqgF  36.57 
 
 
143 aa  72  0.000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.933138  normal 
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  41.04 
 
 
156 aa  72.8  0.000000000002  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_011761  AFE_3061  hypothetical protein  36.57 
 
 
143 aa  72  0.000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp0637  Holliday junction resolvase-like protein  35.07 
 
 
139 aa  71.6  0.000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010424  Daud_0915  Holliday junction resolvase YqgF  32.86 
 
 
141 aa  72  0.000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.242003  n/a   
 
 
-
 
NC_008530  LGAS_0423  Holliday junction resolvase-like protein  36.03 
 
 
143 aa  72  0.000000000003  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  37.04 
 
 
188 aa  71.2  0.000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_008578  Acel_1329  Holliday junction resolvase YqgF  38.52 
 
 
173 aa  70.9  0.000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  0.0531797  normal  0.27422 
 
 
-
 
NC_008347  Mmar10_1708  Holliday junction resolvase YqgF  34.33 
 
 
151 aa  70.9  0.000000000006  Maricaulis maris MCS10  Bacteria  normal  normal  0.180151 
 
 
-
 
NC_013721  HMPREF0424_0376  RNAse YqgF  35.14 
 
 
152 aa  70.5  0.000000000007  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_2347  Holliday junction resolvase-like protein  37.78 
 
 
169 aa  70.1  0.000000000009  Mycobacterium sp. MCS  Bacteria  normal  0.502005  n/a   
 
 
-
 
NC_008705  Mkms_2394  Holliday junction resolvase-like protein  37.78 
 
 
169 aa  70.1  0.000000000009  Mycobacterium sp. KMS  Bacteria  normal  normal  0.345644 
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  33.85 
 
 
151 aa  70.1  0.00000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2388  Holliday junction resolvase-like protein  37.78 
 
 
169 aa  69.7  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0472019 
 
 
-
 
NC_008541  Arth_2277  Holliday junction resolvase YqgF  35.66 
 
 
199 aa  69.7  0.00000000001  Arthrobacter sp. FB24  Bacteria  normal  0.117352  n/a   
 
 
-
 
NC_011886  Achl_2014  Holliday junction resolvase YqgF  34.04 
 
 
207 aa  69.7  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000330035 
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  35.38 
 
 
151 aa  68.9  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0635951 
 
 
-
 
NC_006369  lpl0621  Holliday junction resolvase-like protein  34.33 
 
 
139 aa  68.9  0.00000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_3633  Holliday junction resolvase YqgF  31.82 
 
 
158 aa  69.3  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  36.69 
 
 
168 aa  69.3  0.00000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  35.38 
 
 
160 aa  68.6  0.00000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_013517  Sterm_2739  Holliday junction resolvase YqgF  37.23 
 
 
137 aa  68.2  0.00000000004  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0348  Holliday junction resolvase YqgF  34.81 
 
 
144 aa  68.2  0.00000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.180305  normal 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  35.88 
 
 
163 aa  68.2  0.00000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal 
 
 
-
 
NC_009636  Smed_0941  Holliday junction resolvase-like protein  36.36 
 
 
165 aa  67.8  0.00000000005  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.22726 
 
 
-
 
NC_009484  Acry_0873  Holliday junction resolvase YqgF  33.08 
 
 
158 aa  67.8  0.00000000005  Acidiphilium cryptum JF-5  Bacteria  normal  0.205729  n/a   
 
 
-
 
NC_013169  Ksed_12520  conserved hypothetical protein TIGR00250  35.07 
 
 
161 aa  67.8  0.00000000005  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.101388  normal  0.418633 
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  33.08 
 
 
141 aa  67.8  0.00000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_013162  Coch_1395  Holliday junction resolvase YqgF  32.35 
 
 
143 aa  67  0.00000000007  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  36.09 
 
 
160 aa  67  0.00000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0446184 
 
 
-
 
NC_013411  GYMC61_0964  Holliday junction resolvase YqgF  37.04 
 
 
138 aa  67  0.00000000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007951  Bxe_A3810  Holliday junction resolvase-like protein  36.92 
 
 
146 aa  67  0.00000000009  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5401  Holliday junction resolvase YqgF  36.76 
 
 
139 aa  67  0.00000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  0.616966  normal  0.68966 
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  33.33 
 
 
146 aa  66.6  0.0000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_011725  BCB4264_A4506  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  66.2  0.0000000001  Bacillus cereus B4264  Bacteria  normal  0.860088  n/a   
 
 
-
 
NC_011772  BCG9842_B0730  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  66.2  0.0000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000542239  normal 
 
 
-
 
NC_010184  BcerKBAB4_4233  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  66.6  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272031  n/a   
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  39.23 
 
 
160 aa  66.2  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  34.35 
 
 
161 aa  66.2  0.0000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_4469  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000240455  n/a   
 
 
-
 
NC_011773  BCAH820_4466  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000283196 
 
 
-
 
NC_005945  BAS4282  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.000000036093  n/a   
 
 
-
 
NC_005957  BT9727_4119  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  3.61572e-18  n/a   
 
 
-
 
NC_006274  BCZK4130  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000238321  n/a   
 
 
-
 
NC_007492  Pfl01_5312  Holliday junction resolvase-like protein  34.35 
 
 
145 aa  65.5  0.0000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0190801  normal  0.217295 
 
 
-
 
NC_011989  Avi_1768  Holliday junction resolvase-like protein  34.88 
 
 
158 aa  65.9  0.0000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4614  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.0000000000846091  n/a   
 
 
-
 
NC_009253  Dred_0775  Holliday junction resolvase YqgF  33.08 
 
 
137 aa  65.9  0.0000000002  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.00000000463594  n/a   
 
 
-
 
NC_009439  Pmen_0399  Holliday junction resolvase-like protein  35.11 
 
 
144 aa  66.2  0.0000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A4519  Holliday junction resolvase-like protein  36.3 
 
 
137 aa  65.9  0.0000000002  Bacillus cereus AH187  Bacteria  hitchhiker  0.000203205  n/a   
 
 
-
 
NC_007644  Moth_1640  Holliday junction resolvase YqgF  38.24 
 
 
140 aa  65.1  0.0000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.278901  normal  0.163549 
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  38.64 
 
 
152 aa  65.1  0.0000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  31.06 
 
 
141 aa  65.1  0.0000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal 
 
 
-
 
NC_013946  Mrub_2951  Holliday junction resolvase YqgF  31.82 
 
 
136 aa  65.1  0.0000000003  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1895  Holliday junction resolvase-like protein  37.31 
 
 
165 aa  64.7  0.0000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.273411  normal 
 
 
-
 
NC_011901  Tgr7_2911  Holliday junction resolvase YqgF  33.58 
 
 
163 aa  64.7  0.0000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.816073  n/a   
 
 
-
 
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