More than 300 homologs were found in PanDaTox collection
for query gene Cpin_0986 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_0986  response regulator receiver protein  100 
 
 
143 aa  292  1e-78  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0750  response regulator receiver protein  42.48 
 
 
124 aa  92.4  2e-18  Spirosoma linguale DSM 74  Bacteria  normal  0.55496  normal 
 
 
-
 
NC_007484  Noc_0723  two component, sigma-54 specific, Fis family transcriptional regulator  40.35 
 
 
444 aa  86.7  1e-16  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00153946  n/a   
 
 
-
 
NC_014158  Tpau_3248  two component transcriptional regulator, winged helix family  34.75 
 
 
224 aa  86.7  1e-16  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2246  KDP operon transcriptional regulatory protein kdpE  39.66 
 
 
230 aa  84.3  5e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.683582  n/a   
 
 
-
 
NC_011901  Tgr7_2618  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
453 aa  84.3  5e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.153552  n/a   
 
 
-
 
NC_007492  Pfl01_4840  two-component response regulator PilR  40.35 
 
 
448 aa  84.3  6e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.43512  normal  0.760188 
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  37.72 
 
 
451 aa  84.3  6e-16  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  35.04 
 
 
230 aa  83.6  8e-16  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2056  DNA-binding response regulator  37.61 
 
 
227 aa  82  0.000000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.413172  n/a   
 
 
-
 
NC_006368  lpp1176  hypothetical protein  37.61 
 
 
442 aa  82.8  0.000000000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1182  hypothetical protein  37.61 
 
 
442 aa  82.8  0.000000000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007530  GBAA_2212  DNA-binding response regulator  37.61 
 
 
227 aa  82  0.000000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2240  DNA-binding response regulator  37.61 
 
 
227 aa  82  0.000000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.85177e-28 
 
 
-
 
NC_008463  PA14_22760  putative two-component response regulator  35.59 
 
 
225 aa  82.4  0.000000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0539892 
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  37.74 
 
 
230 aa  82  0.000000000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0440  two component transcriptional regulator, winged helix family  37.74 
 
 
230 aa  82.4  0.000000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0237  response regulator receiver  39.05 
 
 
248 aa  81.3  0.000000000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1922  putative two-component response regulator  35.59 
 
 
225 aa  81.3  0.000000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_008726  Mvan_4763  two component transcriptional regulator  35.4 
 
 
230 aa  81.3  0.000000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.96205  normal 
 
 
-
 
NC_007005  Psyr_2051  response regulator receiver:transcriptional regulatory protein, C-terminal  36.67 
 
 
230 aa  81.3  0.000000000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.191031  normal  0.53595 
 
 
-
 
NC_013526  Tter_2094  two component transcriptional regulator, winged helix family  35.71 
 
 
231 aa  80.9  0.000000000000006  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4665  two component transcriptional regulator, winged helix family  34.21 
 
 
235 aa  80.5  0.000000000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.880727  normal  0.209776 
 
 
-
 
NC_011757  Mchl_0182  two component transcriptional regulator, winged helix family  39.05 
 
 
248 aa  80.9  0.000000000000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.745426 
 
 
-
 
NC_012560  Avin_24530  Response regulator KdpE  40.57 
 
 
232 aa  80.9  0.000000000000006  Azotobacter vinelandii DJ  Bacteria  normal  0.0689152  n/a   
 
 
-
 
NC_010717  PXO_04383  two-component system regulatory protein  39.66 
 
 
226 aa  80.5  0.000000000000007  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  32.74 
 
 
236 aa  80.5  0.000000000000007  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_009439  Pmen_1831  two component transcriptional regulator  34.75 
 
 
225 aa  80.5  0.000000000000008  Pseudomonas mendocina ymp  Bacteria  normal  0.989444  normal  0.522163 
 
 
-
 
NC_011725  BCB4264_A2194  DNA-binding response regulator  36.7 
 
 
227 aa  80.1  0.000000000000009  Bacillus cereus B4264  Bacteria  hitchhiker  0.00702475  n/a   
 
 
-
 
NC_008740  Maqu_0874  two component, sigma54 specific, Fis family transcriptional regulator  37.17 
 
 
464 aa  80.1  0.000000000000009  Marinobacter aquaeolei VT8  Bacteria  normal  0.593832  n/a   
 
 
-
 
NC_010501  PputW619_3482  two component transcriptional regulator  35 
 
 
231 aa  79.7  0.00000000000001  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1017  two component transcriptional regulator  37.17 
 
 
229 aa  80.1  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.957911  normal  0.735899 
 
 
-
 
NC_008578  Acel_1196  two component transcriptional regulator  33.63 
 
 
240 aa  79.7  0.00000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0823  type 4 fimbriae expression regulatory protein pilR  37.39 
 
 
446 aa  79.3  0.00000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0662  helix-turn-helix, Fis-type  36.21 
 
 
451 aa  79  0.00000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_0364  two component, sigma54 specific, transcriptional regulator, Fis family  38.18 
 
 
451 aa  79  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.48055 
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  35.25 
 
 
461 aa  79  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  35.9 
 
 
494 aa  79  0.00000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4608  two component transcriptional regulator  36.89 
 
 
226 aa  78.6  0.00000000000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6070  two component response regulator  35.54 
 
 
228 aa  79.3  0.00000000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4230  two component transcriptional regulator  36.89 
 
 
226 aa  78.6  0.00000000000002  Mycobacterium sp. MCS  Bacteria  normal  0.285059  n/a   
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  33.88 
 
 
225 aa  79  0.00000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_1056  DNA-binding response regulator  36.79 
 
 
226 aa  79.3  0.00000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.775205  n/a   
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  35.25 
 
 
461 aa  79  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4296  two component transcriptional regulator  36.89 
 
 
226 aa  78.6  0.00000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.0135013  normal  0.794825 
 
 
-
 
NC_012791  Vapar_0958  two component, sigma54 specific, transcriptional regulator, Fis family  35.92 
 
 
513 aa  78.6  0.00000000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0722  helix-turn-helix, Fis-type  37.39 
 
 
445 aa  78.6  0.00000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_15610  Response regulator, transciptional regulatory protein  33.9 
 
 
225 aa  78.2  0.00000000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.0572115  n/a   
 
 
-
 
NC_009439  Pmen_0965  two-component response regulator PilR  36.28 
 
 
446 aa  78.6  0.00000000000003  Pseudomonas mendocina ymp  Bacteria  normal  0.25964  normal 
 
 
-
 
NC_008577  Shewana3_0059  two component transcriptional regulator  34.91 
 
 
229 aa  78.6  0.00000000000003  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000000152099 
 
 
-
 
NC_013889  TK90_2124  two component, sigma54 specific, transcriptional regulator, Fis family  35.96 
 
 
474 aa  78.6  0.00000000000003  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0345179 
 
 
-
 
NC_011761  AFE_0185  type IV fimbriae expression regulatory protein PilR, putative  38.18 
 
 
445 aa  78.6  0.00000000000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.103259  n/a   
 
 
-
 
NC_008752  Aave_0359  two component transcriptional regulator  38.1 
 
 
236 aa  78.2  0.00000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.274157  normal  0.104876 
 
 
-
 
NC_011145  AnaeK_0939  two component transcriptional regulator, winged helix family  33.03 
 
 
231 aa  77.8  0.00000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.102691  n/a   
 
 
-
 
NC_009428  Rsph17025_1488  two component, sigma54 specific, Fis family transcriptional regulator  36.75 
 
 
455 aa  78.2  0.00000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.832687 
 
 
-
 
NC_007493  RSP_2838  nitrogen metabolism transcriptional regulator, NtrC  36.75 
 
 
455 aa  78.2  0.00000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0328868  n/a   
 
 
-
 
NC_014148  Plim_1875  response regulator receiver  39.82 
 
 
230 aa  78.2  0.00000000000004  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.72432  n/a   
 
 
-
 
NC_009656  PSPA7_5187  two-component response regulator PilR  37.17 
 
 
445 aa  78.2  0.00000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_60260  two-component response regulator PilR  37.17 
 
 
445 aa  78.2  0.00000000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.000000831057 
 
 
-
 
NC_009049  Rsph17029_1456  two component, sigma54 specific, Fis family transcriptional regulator  36.75 
 
 
455 aa  78.2  0.00000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal  0.178058 
 
 
-
 
NC_011891  A2cp1_0942  two component transcriptional regulator, winged helix family  33.03 
 
 
231 aa  77.8  0.00000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0532517  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  33.33 
 
 
230 aa  77.4  0.00000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  36.21 
 
 
448 aa  77.8  0.00000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4029  two component transcriptional regulator  37.07 
 
 
241 aa  77.4  0.00000000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.871415 
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  32.76 
 
 
241 aa  77.4  0.00000000000006  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_013204  Elen_2842  two component transcriptional regulator, winged helix family  35.78 
 
 
235 aa  77.4  0.00000000000006  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1866  response regulator receiver modulated diguanylate cyclase  30.47 
 
 
326 aa  77.4  0.00000000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11045  transcriptional regulatory protein kdpE  33.91 
 
 
226 aa  77.4  0.00000000000006  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0949  two component transcriptional regulator, winged helix family  38.68 
 
 
229 aa  77.4  0.00000000000006  Methylobacterium populi BJ001  Bacteria  normal  0.0140851  normal 
 
 
-
 
NC_011886  Achl_1791  two component transcriptional regulator, winged helix family  35.4 
 
 
240 aa  77.4  0.00000000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000000442123 
 
 
-
 
NC_013132  Cpin_2890  response regulator receiver protein  39.5 
 
 
132 aa  77.4  0.00000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0214  two component, sigma54 specific, Fis family transcriptional regulator  37.17 
 
 
455 aa  77.4  0.00000000000007  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.662344 
 
 
-
 
NC_008044  TM1040_1361  two component, sigma54 specific, Fis family transcriptional regulator  35.9 
 
 
459 aa  77.4  0.00000000000007  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3011  two component, sigma54 specific, Fis family transcriptional regulator  36.97 
 
 
449 aa  77  0.00000000000007  Magnetococcus sp. MC-1  Bacteria  normal  0.0319144  normal 
 
 
-
 
NC_009921  Franean1_4329  two component transcriptional regulator  33.91 
 
 
236 aa  77  0.00000000000008  Frankia sp. EAN1pec  Bacteria  normal  0.077082  normal 
 
 
-
 
NC_007778  RPB_4649  two component transcriptional regulator  33.91 
 
 
230 aa  77  0.00000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.424735  normal 
 
 
-
 
NC_008321  Shewmr4_0053  two component transcriptional regulator  34.91 
 
 
229 aa  77  0.00000000000008  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.00000176822 
 
 
-
 
NC_007493  RSP_1269  two component transcriptional regulator  33.33 
 
 
228 aa  76.6  0.00000000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2927  two component transcriptional regulator  33.33 
 
 
228 aa  76.6  0.00000000000009  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  31.9 
 
 
257 aa  76.6  0.00000000000009  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2096  signal transduction histidine kinase  39 
 
 
526 aa  77  0.00000000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.0713574 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  35.14 
 
 
387 aa  76.6  0.0000000000001  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0051  two component transcriptional regulator  33.96 
 
 
229 aa  76.3  0.0000000000001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_4157  winged helix family two component transcriptional regulator  35.34 
 
 
231 aa  76.3  0.0000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.507569  normal 
 
 
-
 
NC_013173  Dbac_1042  putative two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
465 aa  76.3  0.0000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.000166307  n/a   
 
 
-
 
NC_010001  Cphy_0742  two component transcriptional regulator  36.36 
 
 
245 aa  76.3  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1711  two component transcriptional regulator  35.34 
 
 
231 aa  76.3  0.0000000000001  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_0828  two component transcriptional regulator, winged helix family  37.07 
 
 
232 aa  76.6  0.0000000000001  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.159677 
 
 
-
 
NC_011901  Tgr7_0200  two component, sigma54 specific, transcriptional regulator, Fis family  38.32 
 
 
458 aa  76.6  0.0000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.162426  n/a   
 
 
-
 
NC_008322  Shewmr7_0051  two component transcriptional regulator  33.96 
 
 
229 aa  76.3  0.0000000000001  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.0030378 
 
 
-
 
NC_009438  Sputcn32_0048  two component transcriptional regulator  33.96 
 
 
229 aa  76.6  0.0000000000001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1245  two component, sigma54 specific, transcriptional regulator, Fis family protein  31.4 
 
 
472 aa  76.3  0.0000000000001  Psychromonas ingrahamii 37  Bacteria  normal  0.390474  normal  0.0307837 
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  34.86 
 
 
235 aa  75.5  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  34.86 
 
 
235 aa  75.5  0.0000000000002  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  34.86 
 
 
235 aa  75.9  0.0000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  34.86 
 
 
235 aa  75.9  0.0000000000002  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_007925  RPC_3025  two component transcriptional regulator  33.33 
 
 
270 aa  75.9  0.0000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4050  two component transcriptional regulator, winged helix family  40.57 
 
 
227 aa  76.3  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00552008  n/a   
 
 
-
 
NC_009050  Rsph17029_3815  two component transcriptional regulator  31.13 
 
 
219 aa  75.9  0.0000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.681737  normal  0.25062 
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  34.86 
 
 
235 aa  75.5  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
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