| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1831 |
|---|
| Symbol | |
|---|
| ID | 5109961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2019976 |
|---|
| End bp | 2020653 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640503063 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001187327 |
|---|
| Protein GI | 146306862 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.989444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.522163 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGC TGCTGCTGAT CGACGACGAT CAGGAACTGT GCGAACTGCT GAGCAGCTGG
CTGACTCAGG AGGGTTTTCA GGTCACCGCC TGTCACGAGG CCGGCAACGC CCGCCGGGCG
CTGGCCCTAC AGGCCCCCGA CGCGGTGGTG CTGGATGTGA TGCTGCCAGA CGGCAGCGGG
CTGGAACTGC TCAAGCAACT GCGCAGCGAA CATCCCGAGC TGCCGGTGCT GATGCTCTCG
GCCCGCGGCG AGCCGCTGGA CCGCATTCTG GGTCTGGAGC TGGGCGCCGA TGACTACCTG
GCCAAGCCCT GCGACCCACG CGAGCTGACC GCGCGCCTGC GCGCCGTGCT GCGGCGCACG
GCTCCGGCGC CGACCAGCAG CCAGCTGGAA CAGGGCGACC TGAGCTTCAG CCCCAACCGC
GGCGTGGTCA GCATTGGCGA ACATGACGTG CCGCTGACCC TTTCCGAGAG CCGCCTGCTC
GAGGCGCTGC TGCGCCAGCC TGGCGAGCCC GTGGACAAAC AGGAACTGGC TCAGCTGGCC
CTGGGGCGCA AGCTGACCCT GTACGACCGC AGCCTGGACA TGCACGTCAG CAACCTGCGC
AAGAAGCTCG GCCCGCACCC GGACGGCCGC CCGCGCATCC TCGCCCTGCG CAGCCGCGGC
TATTACTACG CCCCGTGA
|
|---|
| Protein sequence | MSRLLLIDDD QELCELLSSW LTQEGFQVTA CHEAGNARRA LALQAPDAVV LDVMLPDGSG
LELLKQLRSE HPELPVLMLS ARGEPLDRIL GLELGADDYL AKPCDPRELT ARLRAVLRRT
APAPTSSQLE QGDLSFSPNR GVVSIGEHDV PLTLSESRLL EALLRQPGEP VDKQELAQLA
LGRKLTLYDR SLDMHVSNLR KKLGPHPDGR PRILALRSRG YYYAP
|
|---|
| |