More than 300 homologs were found in PanDaTox collection
for query gene Bpro_0662 on replicon NC_007948
Organism: Polaromonas sp. JS666



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007948  Bpro_0662  RpiR family transcriptional regulator  100 
 
 
303 aa  602  1.0000000000000001e-171  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0928  RpiR family transcriptional regulator  91.09 
 
 
310 aa  535  1e-151  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1220  transcriptional regulator, RpiR family  60.27 
 
 
303 aa  347  2e-94  Variovorax paradoxus S110  Bacteria  normal  0.930143  n/a   
 
 
-
 
NC_008786  Veis_3330  RpiR family transcriptional regulator  59.93 
 
 
305 aa  345  7e-94  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.171087 
 
 
-
 
NC_012856  Rpic12D_2999  transcriptional regulator, RpiR family  54.04 
 
 
287 aa  251  1e-65  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3346  transcriptional regulator, RpiR family  54.21 
 
 
287 aa  251  1e-65  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0750  RpiR family transcriptional regulator  36.58 
 
 
281 aa  149  7e-35  Polaromonas sp. JS666  Bacteria  normal  0.414867  normal  0.513903 
 
 
-
 
NC_010622  Bphy_2581  RpiR family transcriptional regulator  37.64 
 
 
278 aa  145  6e-34  Burkholderia phymatum STM815  Bacteria  normal  0.0624506  hitchhiker  0.000000255705 
 
 
-
 
NC_007951  Bxe_A0588  RpiR family transcriptional regulator  37.74 
 
 
273 aa  145  1e-33  Burkholderia xenovorans LB400  Bacteria  normal  0.189062  normal 
 
 
-
 
NC_013510  Tcur_4022  transcriptional regulator, RpiR family  37.6 
 
 
320 aa  142  7e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0204031  n/a   
 
 
-
 
NC_011992  Dtpsy_0672  transcriptional regulator, RpiR family  36.05 
 
 
281 aa  142  9e-33  Acidovorax ebreus TPSY  Bacteria  normal  0.654483  n/a   
 
 
-
 
NC_010508  Bcenmc03_0626  RpiR family transcriptional regulator  34.89 
 
 
282 aa  141  9.999999999999999e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3371  transcriptional regulator, RpiR family  35.48 
 
 
281 aa  141  9.999999999999999e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0964604  hitchhiker  0.00000000707391 
 
 
-
 
NC_008060  Bcen_0176  RpiR family transcriptional regulator  34.89 
 
 
282 aa  141  9.999999999999999e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0659  RpiR family transcriptional regulator  34.89 
 
 
282 aa  141  9.999999999999999e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  0.78991  n/a   
 
 
-
 
NC_008782  Ajs_0694  RpiR family transcriptional regulator  36.05 
 
 
281 aa  141  1.9999999999999998e-32  Acidovorax sp. JS42  Bacteria  normal  hitchhiker  0.00592918 
 
 
-
 
NC_008390  Bamb_0554  RpiR family transcriptional regulator  34.89 
 
 
282 aa  141  1.9999999999999998e-32  Burkholderia ambifaria AMMD  Bacteria  normal  0.335525  n/a   
 
 
-
 
NC_008786  Veis_1778  RpiR family transcriptional regulator  36.82 
 
 
281 aa  141  1.9999999999999998e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.141472  normal 
 
 
-
 
NC_010551  BamMC406_0580  RpiR family transcriptional regulator  34.89 
 
 
282 aa  141  1.9999999999999998e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.658912  normal  0.89076 
 
 
-
 
NC_009076  BURPS1106A_3444  RpiR family transcriptional regulator  35.82 
 
 
332 aa  140  3e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2447  RpiR family transcriptional regulator  35.46 
 
 
332 aa  140  3e-32  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3444  RpiR family transcriptional regulator  35.82 
 
 
339 aa  140  3e-32  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3745  RpiR family transcriptional regulator  34.89 
 
 
282 aa  140  3e-32  Burkholderia sp. 383  Bacteria  normal  normal  0.767556 
 
 
-
 
NC_009080  BMA10247_2634  RpiR family transcriptional regulator  35.46 
 
 
332 aa  140  3e-32  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1223  RpiR family transcriptional regulator  35.46 
 
 
339 aa  140  3e-32  Burkholderia mallei NCTC 10229  Bacteria  normal  0.809611  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0365  RpiR family transcriptional regulator  35.46 
 
 
332 aa  140  3e-32  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3409  RpiR family transcriptional regulator  35.82 
 
 
332 aa  140  3e-32  Burkholderia pseudomallei 668  Bacteria  normal  0.977628  n/a   
 
 
-
 
NC_007651  BTH_I1216  RpiR family transcriptional regulator  35.82 
 
 
334 aa  139  3.9999999999999997e-32  Burkholderia thailandensis E264  Bacteria  normal  0.3152  n/a   
 
 
-
 
NC_006348  BMA2132  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
641 aa  139  4.999999999999999e-32  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2002  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
620 aa  139  4.999999999999999e-32  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0778  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
620 aa  139  4.999999999999999e-32  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2612  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
620 aa  139  4.999999999999999e-32  Burkholderia mallei NCTC 10229  Bacteria  normal  0.85018  n/a   
 
 
-
 
NC_009074  BURPS668_3001  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
641 aa  139  6e-32  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3090  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
641 aa  139  7e-32  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1550  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
641 aa  139  7e-32  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3055  bifunctional glucokinase/RpiR family transcriptional regulator  35.38 
 
 
641 aa  139  7e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  0.570164  n/a   
 
 
-
 
NC_008228  Patl_0969  DNA-binding transcriptional regulator HexR  31.1 
 
 
284 aa  139  7.999999999999999e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1025  bifunctional glucokinase/RpiR family transcriptional regulator  34.36 
 
 
638 aa  138  1e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.745776  normal  0.175715 
 
 
-
 
NC_012917  PC1_1831  DNA-binding transcriptional regulator HexR  32.86 
 
 
289 aa  138  1e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.197793  n/a   
 
 
-
 
NC_013421  Pecwa_2115  DNA-binding transcriptional regulator HexR  33.21 
 
 
308 aa  138  1e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1124  RpiR family transcriptional regulator  35.57 
 
 
282 aa  137  2e-31  Rhodoferax ferrireducens T118  Bacteria  normal  0.673079  n/a   
 
 
-
 
NC_007951  Bxe_A3454  bifunctional glucokinase/RpiR family transcriptional regulator  34.36 
 
 
638 aa  137  2e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.0454105  normal  0.179776 
 
 
-
 
NC_010622  Bphy_0625  bifunctional glucokinase/RpiR family transcriptional regulator  35.63 
 
 
639 aa  137  3.0000000000000003e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0652  RpiR family transcriptional regulator  35.8 
 
 
281 aa  136  3.0000000000000003e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.334737  normal  0.0629992 
 
 
-
 
NC_010508  Bcenmc03_0926  bifunctional glucokinase/RpiR family transcriptional regulator  33.98 
 
 
642 aa  136  5e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.789642  normal 
 
 
-
 
NC_007510  Bcep18194_A4068  bifunctional glucokinase/RpiR family transcriptional regulator  33.98 
 
 
642 aa  136  5e-31  Burkholderia sp. 383  Bacteria  normal  0.0150237  normal 
 
 
-
 
NC_008060  Bcen_0486  bifunctional glucokinase/RpiR family transcriptional regulator  33.98 
 
 
642 aa  136  5e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0965  bifunctional glucokinase/RpiR family transcriptional regulator  33.98 
 
 
642 aa  136  5e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0899614  n/a   
 
 
-
 
NC_003910  CPS_2280  DNA-binding transcriptional regulator HexR  31.75 
 
 
282 aa  134  9.999999999999999e-31  Colwellia psychrerythraea 34H  Bacteria  normal  0.499915  n/a   
 
 
-
 
NC_010524  Lcho_3388  RpiR family transcriptional regulator  36.82 
 
 
284 aa  135  9.999999999999999e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010084  Bmul_2433  bifunctional glucokinase/RpiR family transcriptional regulator  33.59 
 
 
642 aa  134  1.9999999999999998e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.399098  normal 
 
 
-
 
NC_010084  Bmul_2724  RpiR family transcriptional regulator  34.89 
 
 
282 aa  134  1.9999999999999998e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0825  bifunctional glucokinase/RpiR family transcriptional regulator  33.2 
 
 
642 aa  133  3e-30  Burkholderia ambifaria AMMD  Bacteria  normal  0.125163  n/a   
 
 
-
 
NC_010551  BamMC406_0837  bifunctional glucokinase/RpiR family transcriptional regulator  33.2 
 
 
642 aa  133  3.9999999999999996e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0941  RpiR family transcriptional regulator  34.31 
 
 
281 aa  132  6e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0472093  normal  0.387072 
 
 
-
 
NC_010676  Bphyt_7211  transcriptional regulator, RpiR family  35.71 
 
 
287 aa  131  1.0000000000000001e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  0.84474  normal 
 
 
-
 
NC_010320  Teth514_0168  RpiR family transcriptional regulator  29.09 
 
 
280 aa  131  1.0000000000000001e-29  Thermoanaerobacter sp. X514  Bacteria  normal  0.057217  n/a   
 
 
-
 
NC_007347  Reut_A1080  RpiR family transcriptional regulator  34.15 
 
 
318 aa  131  1.0000000000000001e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.0801962  n/a   
 
 
-
 
NC_009831  Ssed_2069  DNA-binding transcriptional regulator HexR  29.64 
 
 
284 aa  132  1.0000000000000001e-29  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.0000131353  hitchhiker  0.000414379 
 
 
-
 
NC_009092  Shew_2049  DNA-binding transcriptional regulator HexR  29.64 
 
 
284 aa  130  2.0000000000000002e-29  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000665792  normal  0.388652 
 
 
-
 
NC_007952  Bxe_B0423  RpiR family transcriptional regulator  35.71 
 
 
287 aa  130  2.0000000000000002e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2080  DNA-binding transcriptional regulator HexR  30.39 
 
 
286 aa  131  2.0000000000000002e-29  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.00496237  n/a   
 
 
-
 
NC_012912  Dd1591_2245  DNA-binding transcriptional regulator HexR  31.07 
 
 
289 aa  130  2.0000000000000002e-29  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4054  RpiR family transcriptional regulator  37.3 
 
 
287 aa  130  3e-29  Burkholderia phymatum STM815  Bacteria  normal  0.544392  normal  0.902505 
 
 
-
 
NC_010002  Daci_5676  RpiR family transcriptional regulator  35.02 
 
 
323 aa  130  3e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.321786 
 
 
-
 
NC_011312  VSAL_I2031  DNA-binding transcriptional regulator HexR  30.18 
 
 
284 aa  130  3e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0294963  n/a   
 
 
-
 
NC_004347  SO_2490  DNA-binding transcriptional regulator HexR  31.02 
 
 
284 aa  130  4.0000000000000003e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_02633  DNA-binding transcriptional regulator HexR  30.36 
 
 
284 aa  130  4.0000000000000003e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_2023  DNA-binding transcriptional regulator HexR  31.03 
 
 
289 aa  129  5.0000000000000004e-29  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.197371  n/a   
 
 
-
 
NC_008345  Sfri_1891  DNA-binding transcriptional regulator HexR  30 
 
 
284 aa  129  5.0000000000000004e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2046  DNA-binding transcriptional regulator HexR  33.21 
 
 
289 aa  129  6e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.45003 
 
 
-
 
NC_009832  Spro_2769  DNA-binding transcriptional regulator HexR  31.07 
 
 
290 aa  129  6e-29  Serratia proteamaculans 568  Bacteria  normal  0.0149863  hitchhiker  0.00789418 
 
 
-
 
NC_010465  YPK_2135  DNA-binding transcriptional regulator HexR  31.03 
 
 
301 aa  129  6e-29  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2101  DNA-binding transcriptional regulator HexR  33.21 
 
 
289 aa  129  6e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.928102 
 
 
-
 
NC_011094  SeSA_A2041  DNA-binding transcriptional regulator HexR  33.21 
 
 
289 aa  129  6e-29  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2413  DNA-binding transcriptional regulator HexR  31.03 
 
 
301 aa  129  6e-29  Yersinia pestis Angola  Bacteria  hitchhiker  0.000012699  normal 
 
 
-
 
NC_011149  SeAg_B1237  DNA-binding transcriptional regulator HexR  33.21 
 
 
289 aa  129  6e-29  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.101978  n/a   
 
 
-
 
NC_009438  Sputcn32_1865  DNA-binding transcriptional regulator HexR  30.66 
 
 
284 aa  129  7.000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1361  DNA-binding transcriptional regulator HexR  33.21 
 
 
289 aa  129  7.000000000000001e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.812613  hitchhiker  0.000131827 
 
 
-
 
NC_010506  Swoo_2540  DNA-binding transcriptional regulator HexR  28.93 
 
 
284 aa  129  7.000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0495107  normal  0.0835263 
 
 
-
 
NC_012880  Dd703_2137  DNA-binding transcriptional regulator HexR  31.07 
 
 
289 aa  129  7.000000000000001e-29  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00439922  n/a   
 
 
-
 
NC_012560  Avin_02030  transcriptional regulatory protein HexR  33.33 
 
 
288 aa  128  1.0000000000000001e-28  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2129  DNA-binding transcriptional regulator HexR  30.29 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella baltica OS185  Bacteria  hitchhiker  0.00123484  n/a   
 
 
-
 
NC_009901  Spea_2336  DNA-binding transcriptional regulator HexR  29.29 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella pealeana ATCC 700345  Bacteria  normal  0.760972  n/a   
 
 
-
 
NC_009997  Sbal195_2174  DNA-binding transcriptional regulator HexR  30.29 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella baltica OS195  Bacteria  normal  0.271639  normal  0.12603 
 
 
-
 
NC_011663  Sbal223_2255  DNA-binding transcriptional regulator HexR  30.29 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella baltica OS223  Bacteria  hitchhiker  0.000281724  hitchhiker  0.00000550313 
 
 
-
 
NC_009052  Sbal_2242  DNA-binding transcriptional regulator HexR  30.29 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009035  Sbal_4528  DNA-binding transcriptional regulator HexR  30.29 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2047  DNA-binding transcriptional regulator HexR  30.66 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella sp. MR-4  Bacteria  normal  normal  0.20632 
 
 
-
 
NC_008322  Shewmr7_1928  DNA-binding transcriptional regulator HexR  30.66 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella sp. MR-7  Bacteria  normal  0.0915843  normal  0.285781 
 
 
-
 
NC_008577  Shewana3_2152  DNA-binding transcriptional regulator HexR  30.66 
 
 
284 aa  128  1.0000000000000001e-28  Shewanella sp. ANA-3  Bacteria  normal  0.284863  normal  0.555524 
 
 
-
 
NC_009436  Ent638_2422  DNA-binding transcriptional regulator HexR  32.5 
 
 
289 aa  127  2.0000000000000002e-28  Enterobacter sp. 638  Bacteria  normal  0.0329148  normal 
 
 
-
 
NC_004311  BRA0744  RpiR family transcriptional regulator  32.59 
 
 
305 aa  127  3e-28  Brucella suis 1330  Bacteria  normal  0.33357  n/a   
 
 
-
 
NC_009504  BOV_A0695  RpiR family transcriptional regulator  32.59 
 
 
305 aa  127  3e-28  Brucella ovis ATCC 25840  Bacteria  normal  0.674181  n/a   
 
 
-
 
NC_009457  VC0395_A0718  DNA-binding transcriptional regulator HexR  29.64 
 
 
284 aa  127  3e-28  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_35980  transcriptional regulator, RpiR family  33.97 
 
 
333 aa  126  4.0000000000000003e-28  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.309329  normal  0.261129 
 
 
-
 
NC_008463  PA14_71780  RpiR family transcriptional regulator  34.11 
 
 
293 aa  126  5e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1776  transcriptional regulator, RpiR family  32.13 
 
 
281 aa  126  6e-28  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3272  RpiR family transcriptional regulator  33.33 
 
 
289 aa  125  6e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.854433  n/a   
 
 
-
 
NC_009656  PSPA7_6227  putative transcriptional regulator  33.72 
 
 
293 aa  124  1e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
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