| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2069 |
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| Symbol | |
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| ID | 5611539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2506862 |
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| End bp | 2507716 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932966 |
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| Product | DNA-binding transcriptional regulator HexR |
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| Protein accession | YP_001473806 |
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| Protein GI | 157375206 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000131353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000414379 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATACCC TTGAAAAGGT TCAAAAAAGC CTTGCACATT TTAGTAAATC AGAGCGCAAA
GTTGCTGAGG TTATTCTAGC CTCCCCCCAA ACGGCGATCC ACTCTAGTAT CGCCACTTTG
GCAAAGATGG CAGATGTCAG TGAACCTACC GTCAATCGCT TCTGCCGACG ATTAGATACT
AAAGGCTTTC CTGACTTTAA ACTTCATCGA GCTCAAAGCT TAGCTAATGG CACGCCGTAT
GTCAGCCGAC ATGTAGAAGA AGATGACAGT CCTGATTCCT ATACGACAAA AATCTTCGAA
TCTTCAATGG CTTCGCTCGA TACTGCTCGT CAGAGTATGG ATACCGCCGC GATAAATAAA
GCCGTTGATA TATTGACTCA AGCTAAGAAG ATCTCTTTCT TCGGCCTTGG AGCCTCGGCT
TCTGTGGCCC ATGATGCGCA AAATAAATTT TTCCGCTTCA ATGTACCTGT TATCTGTTTC
GATGACGTTT TAATGCAGCG TATGAGCTGC ATCAATAGTG GTGAGGGTGA CGTTATCGTA
CTGATCTCCC ATACAGGCCG AACTAAGTCT ATGATAGATA TCGCCCGTAT TGCTCGCGAG
AATGGTGCTG CAGTCATTGG TCTCACGGCA AGAAACTCGC CTCTATCTAG CGAATGTACC
CTGCCCGTCA CCATGGAAGT ACCAGAAGAT ACCGACATGT ACCTCCCTAT GGCGTCCCGT
CTGGCACAAT TAGTGGTTAT CGATGTGTTA GCTACCGGAT TCACCTTGCG ACGAGGACCA
CGCTTTAGAG AGAGTCTGAA GCGAGTTAAA GAGGTATTGA AGGAATCTAG AATTGATAAA
GATCCCATAC TGTAA
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| Protein sequence | MNTLEKVQKS LAHFSKSERK VAEVILASPQ TAIHSSIATL AKMADVSEPT VNRFCRRLDT
KGFPDFKLHR AQSLANGTPY VSRHVEEDDS PDSYTTKIFE SSMASLDTAR QSMDTAAINK
AVDILTQAKK ISFFGLGASA SVAHDAQNKF FRFNVPVICF DDVLMQRMSC INSGEGDVIV
LISHTGRTKS MIDIARIARE NGAAVIGLTA RNSPLSSECT LPVTMEVPED TDMYLPMASR
LAQLVVIDVL ATGFTLRRGP RFRESLKRVK EVLKESRIDK DPIL
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