| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0941 |
|---|
| Symbol | |
|---|
| ID | 4666366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 1024915 |
|---|
| End bp | 1025760 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639822141 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_969313 |
|---|
| Protein GI | 120609635 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0472093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.387072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAGC GCATCACCGC CTCACTGCCT TCGCTGGCCC CCGCCGAACA GCGGGTGGGC
CAGCTGGTGC TGCAGGACGC GCGTGCGTTC GCGCGGCTGC CGGTGCGGGA GCTGGCGGCG
CGGGCGGGGG TGAGCAAGCC CACGGTGGTG CGCTTTTGCC GCAGCATGGG GTACGACGGG
CTGGCCGACT TCAAGCTCAA GCTCGCGGGC AGCGTGAGCG AGGGCGTGCC GTTCATCCAC
CGCAGCGTGG ACGCCGACGA CAAGACCGGC GACGTGCTCG TGAAGGTCGT GGACAACGCC
GTCGCCGCAT TCCTGCAGTA CCGCAACGCG GCGAGCACCA AGGCCATCGA GCAGGCCGCG
CAGGCGATCG CAGCCACCTG GCAGACAGGC CGGCGCATCG AGTTCTACGG CGCCGGCAAC
TCGGGCATCG TGGCGCAGGA CGCGCAGCAC AAGTTCTTCC GGCTGGGCGT GACCAGCCTC
GCGACCAGCG ATGGACACAT GCAGGTCATG AGCGCGACCC TGCTGGGACC GGGCGACTGC
GTGGTGATCG TCTCCAACTC CGGGCGCACG CGCGACCTCA TGGACGCGAC CGACATCGCC
CGCAGGAACG GCGCCACCAC CATCGCCATC ACCGCCAGCG GCTCGCCCCT GGCCAGCGCC
TGCCACATCC ATCTGGCGGC GGACCATCCA GAGGGATACG ACCGCTACAG CCCGATGGTC
TCCCGCCTGC TGCACCTGCT CATCATCGAC GTGCTCGCCA CCTGCGTGGC GCTGCGCATC
GGCGAGCCGC TGCAGCCCCG CCTGCAGCAG ATGAAGGACA ACCTGCGGGC CAAGCGCTAC
ACCTGA
|
|---|
| Protein sequence | MLERITASLP SLAPAEQRVG QLVLQDARAF ARLPVRELAA RAGVSKPTVV RFCRSMGYDG
LADFKLKLAG SVSEGVPFIH RSVDADDKTG DVLVKVVDNA VAAFLQYRNA ASTKAIEQAA
QAIAATWQTG RRIEFYGAGN SGIVAQDAQH KFFRLGVTSL ATSDGHMQVM SATLLGPGDC
VVIVSNSGRT RDLMDATDIA RRNGATTIAI TASGSPLASA CHIHLAADHP EGYDRYSPMV
SRLLHLLIID VLATCVALRI GEPLQPRLQQ MKDNLRAKRY T
|
|---|
| |