88 homologs were found in PanDaTox collection
for query gene Apar_0268 on replicon NC_013203
Organism: Atopobium parvulum DSM 20469



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013203  Apar_0268  Methionine synthase vitamin-B12 independent  100 
 
 		 375 aa  775    Atopobium parvulum DSM 20469  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009513  Lreu_1870  methionine synthase, vitamin-B12 independent  53.91 
 
 		 378 aa  417  9.999999999999999e-116  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_3283  Methionine synthase vitamin-B12 independent  51.65 
 
 		 394 aa  405  1.0000000000000001e-112  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_009513  Lreu_1081  methionine synthase, vitamin-B12 independent  52.96 
 
 		 379 aa  407  1.0000000000000001e-112  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.351458  n/a   
 
 
-
 
NC_008531  LEUM_1801  methionine synthase II (cobalamin-independent)  50.41 
 
 		 375 aa  367  1e-100  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  1  n/a   
 
 
-
 
NC_008528  OEOE_1190  methionine synthase II (cobalamin-independent)  45.48 
 
 		 385 aa  337  2.9999999999999997e-91  Oenococcus oeni PSU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0246  Methionine synthase vitamin-B12 independent  45.65 
 
 		 371 aa  321  9.999999999999999e-87  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.489924  n/a   
 
 
-
 
NC_012880  Dd703_2912  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  45.55 
 
 		 368 aa  315  8e-85  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_3103  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  44.86 
 
 		 368 aa  313  3.9999999999999997e-84  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_5702  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  42.32 
 
 		 372 aa  307  2.0000000000000002e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.442954 
 
 
-
 
NC_012917  PC1_1011  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  42.78 
 
 		 368 aa  303  3.0000000000000004e-81  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_3299  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  42.78 
 
 		 368 aa  302  7.000000000000001e-81  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_1584  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  43.47 
 
 		 372 aa  301  1e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.278871  normal  1 
 
 
-
 
NC_013159  Svir_36700  methionine synthase II (cobalamin-independent)  42.67 
 
 		 373 aa  295  6e-79  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.829252  normal  0.784973 
 
 
-
 
NC_009832  Spro_1044  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  43.09 
 
 		 368 aa  294  2e-78  Serratia proteamaculans 568  Bacteria  normal  1  normal  0.131119 
 
 
-
 
NC_009436  Ent638_1987  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  42.82 
 
 		 367 aa  290  4e-77  Enterobacter sp. 638  Bacteria  normal  1  normal  0.130415 
 
 
-
 
NC_007958  RPD_1591  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  41.69 
 
 		 372 aa  288  9e-77  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.442624  normal  1 
 
 
-
 
NC_008528  OEOE_1718  hypothetical protein  39.79 
 
 		 378 aa  288  1e-76  Oenococcus oeni PSU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_1586  methionine synthase, vitamin-B12 independent  43.24 
 
 		 371 aa  287  2e-76  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008530  LGAS_1661  hypothetical protein  40.91 
 
 		 366 aa  287  2e-76  Lactobacillus gasseri ATCC 33323  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_1563  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  41.18 
 
 		 392 aa  285  7e-76  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.246626  n/a   
 
 
-
 
NC_013757  Gobs_3379  Methionine synthase vitamin-B12 independent  44.39 
 
 		 376 aa  282  8.000000000000001e-75  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.101236  n/a   
 
 
-
 
NC_011004  Rpal_4554  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  40.92 
 
 		 373 aa  281  1e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008527  LACR_0752  hypothetical protein  39.36 
 
 		 369 aa  276  4e-73  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.751192  n/a   
 
 
-
 
NC_008531  LEUM_1803  hypothetical protein  39.16 
 
 		 375 aa  270  2.9999999999999997e-71  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_1559  Methionine synthase vitamin-B12 independent  39.95 
 
 		 369 aa  267  2e-70  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_2698  methionine synthase, vitamin-B12 independent  36.91 
 
 		 373 aa  246  6e-64  Chelativorans sp. BNC1  Bacteria  normal  0.0426462  n/a   
 
 
-
 
NC_007948  Bpro_3388  methionine synthase, vitamin-B12 independent  38.56 
 
 		 377 aa  245  8e-64  Polaromonas sp. JS666  Bacteria  normal  0.101975  normal  0.0229793 
 
 
-
 
NC_012791  Vapar_1745  Methionine synthase vitamin-B12 independent  38.92 
 
 		 373 aa  244  9.999999999999999e-64  Variovorax paradoxus S110  Bacteria  normal  0.963683  n/a   
 
 
-
 
NC_007925  RPC_4159  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  36.66 
 
 		 359 aa  229  8e-59  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008148  Rxyl_0933  methionine synthase (B12-independent)  34.95 
 
 		 369 aa  225  9e-58  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.254746  n/a   
 
 
-
 
NC_012880  Dd703_2926  Methionine synthase vitamin-B12 independent  34.97 
 
 		 367 aa  221  1.9999999999999999e-56  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_013171  Apre_1254  MetE protein  32.9 
 
 		 385 aa  206  8e-52  Anaerococcus prevotii DSM 20548  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_3115  Methionine synthase vitamin-B12 independent  33.06 
 
 		 366 aa  192  1e-47  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
BN001303  ANIA_05019  Methionine synthase, vitamin-B12 independent, putative (AFU_orthologue; AFUA_3G12060)  30.3 
 
 		 438 aa  180  2.9999999999999997e-44  Aspergillus nidulans FGSC A4  Eukaryota  normal  1  normal  0.807041 
 
 
-
 
NC_009767  Rcas_2758  methionine synthase vitamin-B12 independent  23.2 
 
 		 340 aa  89  1e-16  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.000302857  normal  1 
 
 
-
 
NC_009523  RoseRS_2516  methionine synthase, vitamin-B12 independent  23.2 
 
 		 340 aa  88.2  2e-16  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.57162 
 
 
-
 
NC_009073  Pcal_0648  methionine synthase (B12-independent)  25.41 
 
 		 384 aa  81.3  0.00000000000002  Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal  1 
 
 
-
 
NC_008701  Pisl_0030  methionine synthase, vitamin-B12 independent  25.34 
 
 		 384 aa  80.9  0.00000000000003  Pyrobaculum islandicum DSM 4184  Archaea  normal  1  normal  1 
 
 
-
 
NC_010525  Tneu_0945  methionine synthase vitamin-B12 independent  25.69 
 
 		 384 aa  80.9  0.00000000000003  Thermoproteus neutrophilus V24Sta  Archaea  normal  0.8649  hitchhiker  0.000170069 
 
 
-
 
NC_009376  Pars_1072  methionine synthase, vitamin-B12 independent  25.41 
 
 		 384 aa  75.9  0.000000000001  Pyrobaculum arsenaticum DSM 13514  Archaea  normal  1  normal  0.564481 
 
 
-
 
NC_009954  Cmaq_0585  methionine synthase vitamin-B12 independent  23.51 
 
 		 388 aa  73.2  0.000000000007  Caldivirga maquilingensis IC-167  Archaea  normal  0.246635  hitchhiker  0.00634375 
 
 
-
 
NC_013730  Slin_5820  Methionine synthase vitamin-B12 independent  24.38 
 
 		 342 aa  71.6  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.392769 
 
 
-
 
NC_009954  Cmaq_0981  methionine synthase vitamin-B12 independent  23.66 
 
 		 393 aa  65.9  0.000000001  Caldivirga maquilingensis IC-167  Archaea  normal  1  normal  1 
 
 
-
 
NC_013922  Nmag_1089  Methionine synthase vitamin-B12 independent  22.31 
 
 		 366 aa  63.9  0.000000005  Natrialba magadii ATCC 43099  Archaea  normal  1  n/a   
 
 
-
 
NC_013202  Hmuk_2667  methionine synthase  21.43 
 
 		 355 aa  63.5  0.000000006  Halomicrobium mukohataei DSM 12286  Archaea  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A1493  hypothetical protein  23.19 
 
 		 333 aa  62.8  0.000000009  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.574311  n/a   
 
 
-
 
NC_011661  Dtur_1757  methionine synthase  23.32 
 
 		 342 aa  62.8  0.00000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
CP001800  Ssol_1385  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  23.05 
 
 		 332 aa  61.6  0.00000002  Sulfolobus solfataricus 98/2  Archaea  normal  0.25974  n/a   
 
 
-
 
NC_010815  Glov_3721  Methionine synthase vitamin-B12 independent  24.59 
 
 		 365 aa  61.2  0.00000002  Geobacter lovleyi SZ  Bacteria  normal  0.0129115  normal  0.3687 
 
 
-
 
NC_013743  Htur_2396  Methionine synthase vitamin-B12 independent  24.04 
 
 		 358 aa  60.1  0.00000006  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013131  Caci_4334  Methionine synthase vitamin-B12 independent  24.18 
 
 		 354 aa  59.7  0.00000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0520376  normal  0.182105 
 
 
-
 
NC_013158  Huta_0080  methionine synthase  22.67 
 
 		 350 aa  59.7  0.00000009  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0497366  n/a   
 
 
-
 
NC_012029  Hlac_2108  methionine synthase  21.18 
 
 		 356 aa  58.5  0.0000002  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.112744  normal  0.0912449 
 
 
-
 
NC_009440  Msed_2248  methionine synthase  22.12 
 
 		 331 aa  58.2  0.0000003  Metallosphaera sedula DSM 5348  Archaea  normal  0.88722  normal  0.0178602 
 
 
-
 
NC_013595  Sros_8776  MetE  22.19 
 
 		 367 aa  57.8  0.0000003  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_1991  methionine synthase, vitamin-B12 independent  25.38 
 
 		 390 aa  57  0.0000005  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_2188  methionine synthase (B12-independent)  23.85 
 
 		 344 aa  55.8  0.000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009714  CHAB381_1170  5-methyltetrahydropteroyltriglutamate-- homocystei ne methyltransferase  21.33 
 
 		 388 aa  55.5  0.000002  Campylobacter hominis ATCC BAA-381  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_1726  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.11 
 
 		 348 aa  55.1  0.000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0182289 
 
 
-
 
NC_011138  MADE_01036  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.41 
 
 		 346 aa  52.4  0.00001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.370026  n/a   
 
 
-
 
NC_012560  Avin_13980  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  20.46 
 
 		 763 aa  52.4  0.00001  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_007794  Saro_2409  methionine synthase, vitamin-B12 independent  21.99 
 
 		 377 aa  52.4  0.00001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_4393  Methionine synthase vitamin-B12 independent  23.02 
 
 		 398 aa  51.6  0.00002  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_02800  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  21.01 
 
 		 344 aa  51.2  0.00003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009524  PsycPRwf_2277  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.83 
 
 		 342 aa  50.4  0.00004  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011661  Dtur_1756  Cobalamin-independent synthase MetE domain protein  20.43 
 
 		 325 aa  50.1  0.00006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_3090  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.64 
 
 		 344 aa  49.7  0.00007  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012803  Mlut_20790  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.9 
 
 		 343 aa  48.9  0.0001  Micrococcus luteus NCTC 2665  Bacteria  normal  1  n/a   
 
 
-
 
NC_009832  Spro_3176  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.41 
 
 		 343 aa  48.1  0.0002  Serratia proteamaculans 568  Bacteria  normal  0.364781  normal  1 
 
 
-
 
NC_008345  Sfri_3578  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.41 
 
 		 355 aa  48.5  0.0002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_007969  Pcryo_0902  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.06 
 
 		 355 aa  48.5  0.0002  Psychrobacter cryohalolentis K5  Bacteria  normal  0.876069  normal  1 
 
 
-
 
NC_013456  VEA_003054  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.66 
 
 		 342 aa  48.1  0.0002  Vibrio sp. Ex25  Bacteria  normal  0.902811  n/a   
 
 
-
 
NC_013037  Dfer_2113  Methionine synthase vitamin-B12 independent  22.32 
 
 		 353 aa  47.8  0.0003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.044306  normal  0.413093 
 
 
-
 
NC_008228  Patl_0921  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  21.22 
 
 		 342 aa  48.1  0.0003  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_3475  Methionine synthase vitamin-B12 independent  20.86 
 
 		 406 aa  46.6  0.0006  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7369  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.69 
 
 		 339 aa  45.4  0.001  Burkholderia sp. 383  Bacteria  normal  1  normal  0.276101 
 
 
-
 
NC_008541  Arth_0521  methionine synthase, vitamin-B12 independent  22.76 
 
 		 361 aa  46.2  0.001  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0388  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.53 
 
 		 355 aa  44.7  0.002  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  0.469919 
 
 
-
 
NC_009436  Ent638_2113  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.89 
 
 		 343 aa  43.9  0.004  Enterobacter sp. 638  Bacteria  normal  0.46001  normal  1 
 
 
-
 
NC_013174  Jden_0200  Methionine synthase vitamin-B12 independent  21.18 
 
 		 402 aa  43.9  0.004  Jonesia denitrificans DSM 20603  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_2698  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.06 
 
 		 344 aa  43.9  0.005  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.260342 
 
 
-
 
NC_010717  PXO_03755  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.94 
 
 		 342 aa  43.9  0.005  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1151  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.69 
 
 		 347 aa  43.5  0.006  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_5073  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.11 
 
 		 342 aa  43.5  0.007  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.942078 
 
 
-
 
NC_008686  Pden_1355  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  20.57 
 
 		 345 aa  43.1  0.007  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_4458  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.77 
 
 		 342 aa  43.1  0.007  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012917  PC1_1464  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  19.71 
 
 		 343 aa  42.7  0.01  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
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