| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_0585 |
|---|
| Symbol | |
|---|
| ID | 5708703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 615067 |
|---|
| End bp | 616233 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641275086 |
|---|
| Product | methionine synthase vitamin-B12 independent |
|---|
| Protein accession | YP_001540416 |
|---|
| Protein GI | 159041164 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.246635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00634375 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATT TATTTGCAAC ATCAGTAGTA GGTAGTTGGC CGAGGCCAAG GTGGTTATTG
GATGCGCTTA AACGCAGGAA TAAGGGTGAG TTAAGCATTG ATGATTTTAA TAAGATCGCC
GATGAGGCTG TGCTTCTTGC CATTAAGTAC CAGGAGGATG CTGGTATTGA TGTGATTACT
GATGGTGAAC AGAGACGCGA CAACTTCTAC TCATTCGTCG TTGATAAGCT TAATGGTGTT
AAGTTAATGA GTGCAGCAGA GTTACTGGAT TACGTTGAGA ATAAGGAGAT GTTTGAGAAC
GTGCTAAGGG CCCAGGACGT GCCATCTACT TCAATAAGGA ACCCGGTGGC TGTGGATAAG
GTGAGTTTAA AGAGGCCCCT TGTCTCAGAT GAAGCATTGT TCCTCAAGGA GCATACTAGA
AGTCGTATTA AAGTGACTAT ACCGGGACCG TACTTACTCA CGAGATCCAT GTGGGTTAAG
GCATTGTCAG GGGGAGTTTA CCCAACTAGG TATGATTTAG CCAAGGATAT TACTAAGATA
CTTAGGGAAG AGATTATTAG GCTTAGGGAT TTAGGCGTGG ATTTCATTCA ACTGGATGAA
CCAACACTAA TGGAGGTGCT TTACGGCAAG TATGGTGTTG GCTCAACATT CATGTGTGCA
GTGCTTGCTG CTAGAATGGA TCCAACCGAG GAGTTGGAGT TCGCTGTAAA CTTGATAAAC
GAGACCATTA AGGGTATTGA TGGTGTTAGA TTAGGTATCC ACGTGTGTAG GGGTAATTGG
ACTAAGAATG AGAAGGCTTT ATTAAGCGGT GACTATAGGC CATTGTTACC ATACCTCATG
GAAACTAAGG TAAAGCAGTT GGTTCTTGAA TTCTCAACAC CAAGGGCTGG TGACGTGGAT
GTTTTAAGGG ATTACGCCAA TGAGAAGGAG ATTGGCCTTG GCGTCGTTAA TCCTAGGAGT
GATGTTGTGG AAAGCGAGGA TTTTGTAATT GAAAGGGTTA AAAGAGTCAT TAAGTTCCAG
GATGCAGGTA AGGTGTGGTT AAACCCAGAC TGCGGTTTCG GAACCTTTGC AGAGGTTCCA
CTGGTTAATT CGGAGATTGC CTATAGGAAG CTGAGAATTA TGGTTAATGC AGCCAAGAAA
CTGAGGCAAG AGTTTACGGG CAAGTAG
|
|---|
| Protein sequence | MSDLFATSVV GSWPRPRWLL DALKRRNKGE LSIDDFNKIA DEAVLLAIKY QEDAGIDVIT
DGEQRRDNFY SFVVDKLNGV KLMSAAELLD YVENKEMFEN VLRAQDVPST SIRNPVAVDK
VSLKRPLVSD EALFLKEHTR SRIKVTIPGP YLLTRSMWVK ALSGGVYPTR YDLAKDITKI
LREEIIRLRD LGVDFIQLDE PTLMEVLYGK YGVGSTFMCA VLAARMDPTE ELEFAVNLIN
ETIKGIDGVR LGIHVCRGNW TKNEKALLSG DYRPLLPYLM ETKVKQLVLE FSTPRAGDVD
VLRDYANEKE IGLGVVNPRS DVVESEDFVI ERVKRVIKFQ DAGKVWLNPD CGFGTFAEVP
LVNSEIAYRK LRIMVNAAKK LRQEFTGK
|
|---|
| |