More than 300 homologs were found in PanDaTox collection
for query gene Acry_1988 on replicon NC_009484
Organism: Acidiphilium cryptum JF-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009484  Acry_1988  histone family protein DNA-binding protein  100 
 
 
89 aa  174  4e-43  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0506  histone family protein DNA-binding protein  84.27 
 
 
89 aa  147  5e-35  Acidiphilium cryptum JF-5  Bacteria  normal  0.105401  n/a   
 
 
-
 
NC_011365  Gdia_1099  histone family protein DNA-binding protein  77.53 
 
 
89 aa  138  1.9999999999999998e-32  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.34321  normal 
 
 
-
 
NC_011365  Gdia_0819  histone family protein DNA-binding protein  73.03 
 
 
89 aa  127  4.0000000000000003e-29  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.158674 
 
 
-
 
NC_011365  Gdia_1014  histone family protein DNA-binding protein  73.03 
 
 
89 aa  127  4.0000000000000003e-29  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.489409  normal 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  43.82 
 
 
90 aa  73.6  0.000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  42.7 
 
 
90 aa  72.8  0.000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  43.82 
 
 
96 aa  71.6  0.000000000004  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  47.67 
 
 
90 aa  70.9  0.000000000005  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0500  histone family protein DNA-binding protein  41.57 
 
 
90 aa  70.9  0.000000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000759527 
 
 
-
 
NC_009943  Dole_1717  histone family protein DNA-binding protein  46.67 
 
 
90 aa  70.1  0.000000000009  Desulfococcus oleovorans Hxd3  Bacteria  unclonable  0.0000000000293556  n/a   
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  45.35 
 
 
90 aa  69.7  0.00000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  41.57 
 
 
90 aa  68.9  0.00000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  43.02 
 
 
90 aa  68.6  0.00000000003  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  43.82 
 
 
90 aa  68.2  0.00000000003  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  46.51 
 
 
90 aa  68.2  0.00000000004  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  46.51 
 
 
90 aa  68.2  0.00000000004  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  43.82 
 
 
90 aa  67.4  0.00000000006  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_008786  Veis_2697  histone family protein DNA-binding protein  45.35 
 
 
105 aa  67  0.00000000007  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.651283 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  42.7 
 
 
90 aa  67.4  0.00000000007  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  42.7 
 
 
90 aa  67  0.00000000008  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  41.57 
 
 
94 aa  66.6  0.0000000001  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  44.19 
 
 
90 aa  66.6  0.0000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  41.57 
 
 
94 aa  66.2  0.0000000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  42.7 
 
 
90 aa  66.6  0.0000000001  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_008825  Mpe_A1956  nucleoid protein Hbs  44.19 
 
 
90 aa  65.5  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.582961  normal  0.45981 
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  42.7 
 
 
90 aa  65.9  0.0000000002  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  40.45 
 
 
90 aa  65.9  0.0000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  44.19 
 
 
90 aa  65.9  0.0000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  41.57 
 
 
90 aa  65.9  0.0000000002  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_011126  HY04AAS1_1051  histone family protein DNA-binding protein  39.77 
 
 
89 aa  65.9  0.0000000002  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.00000000000000497636  n/a   
 
 
-
 
NC_012791  Vapar_1789  histone family protein DNA-binding protein  45.35 
 
 
90 aa  65.1  0.0000000003  Variovorax paradoxus S110  Bacteria  normal  0.970942  n/a   
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  40.45 
 
 
90 aa  65.1  0.0000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_009457  VC0395_A1509  DNA-binding protein HU-beta  41.86 
 
 
90 aa  65.1  0.0000000003  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000490467  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  41.57 
 
 
90 aa  64.7  0.0000000004  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  41.57 
 
 
91 aa  64.7  0.0000000004  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  41.57 
 
 
90 aa  64.3  0.0000000005  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_007948  Bpro_3065  nucleoid protein Hbs  44.19 
 
 
90 aa  64.7  0.0000000005  Polaromonas sp. JS666  Bacteria  normal  0.135138  normal  0.394857 
 
 
-
 
NC_013173  Dbac_2463  histone family protein DNA-binding protein  40.45 
 
 
90 aa  64.3  0.0000000006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0228112  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  41.57 
 
 
90 aa  63.9  0.0000000007  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  39.33 
 
 
90 aa  63.9  0.0000000007  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  43.18 
 
 
94 aa  63.9  0.0000000007  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2521  DNA-binding protein HU-beta  43.18 
 
 
94 aa  63.9  0.0000000007  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0944475  normal  0.0105947 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  43.18 
 
 
94 aa  63.9  0.0000000007  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal 
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  41.18 
 
 
91 aa  63.5  0.0000000008  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  41.86 
 
 
90 aa  63.9  0.0000000008  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_007492  Pfl01_5600  nucleoid protein HU alpha subunit  42.7 
 
 
91 aa  63.5  0.0000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.375895  normal 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  40.7 
 
 
98 aa  63.5  0.0000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  41.86 
 
 
90 aa  63.5  0.0000000008  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62.8  0.000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_009943  Dole_2857  histone family protein DNA-binding protein  42.22 
 
 
90 aa  63.2  0.000000001  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000000465869  n/a   
 
 
-
 
NC_007519  Dde_2058  histone-like DNA-binding protein  40.45 
 
 
90 aa  63.2  0.000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.954956  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  40.7 
 
 
90 aa  62.8  0.000000001  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_009439  Pmen_4401  nucleoid protein HU alpha subunit  41.57 
 
 
90 aa  62.8  0.000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.177499 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  39.33 
 
 
90 aa  63.5  0.000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0914  HU family DNA-binding protein  43.04 
 
 
91 aa  62.8  0.000000001  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  40.45 
 
 
90 aa  62.4  0.000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  39.33 
 
 
91 aa  62.8  0.000000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_004578  PSPTO_5472  DNA-binding protein HU family  40.45 
 
 
111 aa  62  0.000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  43.02 
 
 
90 aa  62.8  0.000000002  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  40.45 
 
 
90 aa  62.4  0.000000002  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  38.2 
 
 
101 aa  62.4  0.000000002  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_011891  A2cp1_2467  histone family protein DNA-binding protein  37.5 
 
 
90 aa  62.4  0.000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.327101  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  38.2 
 
 
90 aa  62  0.000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  40.45 
 
 
90 aa  62.4  0.000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1090  histone family protein DNA-binding protein  39.53 
 
 
90 aa  62.4  0.000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2379  histone family protein DNA-binding protein  37.5 
 
 
90 aa  62.4  0.000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.18589  n/a   
 
 
-
 
NC_007760  Adeh_1488  histone-like DNA-binding protein  37.5 
 
 
90 aa  62.4  0.000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62  0.000000002  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_007947  Mfla_1412  histone-like DNA-binding protein  45.45 
 
 
91 aa  62.8  0.000000002  Methylobacillus flagellatus KT  Bacteria  unclonable  0.0000000000277772  normal 
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  43.02 
 
 
90 aa  62.8  0.000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_008554  Sfum_1430  histone family protein DNA-binding protein  41.57 
 
 
90 aa  62.4  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000153062  normal  0.144736 
 
 
-
 
NC_008554  Sfum_2107  histone family protein DNA-binding protein  41.57 
 
 
90 aa  62.4  0.000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00000844989  hitchhiker  0.00906741 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1546  histone family protein DNA-binding protein  44.19 
 
 
92 aa  61.6  0.000000003  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  4.0402e-16  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  38.2 
 
 
94 aa  61.6  0.000000003  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_009972  Haur_4202  histone family protein DNA-binding protein  43.18 
 
 
95 aa  62  0.000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.806562  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_007005  Psyr_5027  histone-like DNA-binding protein  40.45 
 
 
91 aa  62  0.000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.705107 
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  41.57 
 
 
91 aa  61.6  0.000000003  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  40.45 
 
 
90 aa  62  0.000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  40.45 
 
 
90 aa  62  0.000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  38.2 
 
 
90 aa  61.6  0.000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
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