47 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Bphyt_4021  CDS  NC_010676  36123  36623  -  501  transcriptional regulator, MarR family  YP_001887777  decreased coverage  0.0000000000632832  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4177  CDS  NC_010676  221214  222383  -  1170  protein of unknown function DUF993  YP_001887929  normal  0.455034  decreased coverage  0.000150166  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4178  CDS  NC_010676  222391  223170  -  780  3-ketoacyl-(acyl-carrier-protein) reductase  YP_001887930  normal  0.2571  decreased coverage  0.000132637  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4182  CDS  NC_010676  227041  228549  +  1509  Aldehyde Dehydrogenase  YP_001887934  normal  0.395716  decreased coverage  0.000171916  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4183  CDS  NC_010676  228645  230318  +  1674  glucose-methanol-choline oxidoreductase  YP_001887935  normal  1  decreased coverage  0.000160741  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4184  CDS  NC_010676  230445  231524  +  1080  periplasmic binding protein/LacI transcriptional regulator  YP_001887936  normal  1  decreased coverage  0.000111961  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4452  CDS  NC_010676  520622  522109  -  1488  sulphate transporter  YP_001888198  decreased coverage  0.000256302  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4697  CDS  NC_010676  792641  793042  +  402  hypothetical protein  YP_001888435  decreased coverage  0.00730505  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4753  CDS  NC_010676  862633  863697  +  1065  hypothetical protein  YP_001888488  decreased coverage  0.000555909  normal  0.0601066  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4777  CDS  NC_010676  882564  883073  -  510  hypothetical protein  YP_001888512  decreased coverage  0.00674885  hitchhiker  0.00133084  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4796  CDS  NC_010676  903226  903786  +  561  hypothetical protein  YP_001888531  decreased coverage  0.000000000166036  hitchhiker  0.000000743072  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4847  CDS  NC_010676  963065  966523  -  3459  glucose-methanol-choline oxidoreductase  YP_001888582  decreased coverage  0.000971365  normal  0.0494922  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4875  CDS  NC_010676  999266  999820  +  555  protein of unknown function DUF1089  YP_001888610  decreased coverage  0.000355198  normal  0.582407  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4876  CDS  NC_010676  999795  1000760  -  966  alpha/beta hydrolase fold  YP_001888611  decreased coverage  0.000503768  normal  0.514103  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4912  CDS  NC_010676  1037439  1038122  +  684  Tetratricopeptide TPR_2 repeat protein  YP_001888646  decreased coverage  0.0000000643294  hitchhiker  0.00900686  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4913  CDS  NC_010676  1038159  1038707  +  549  type VI secretion protein, VC_A0107 family  YP_001888647  decreased coverage  0.0000000468167  normal  0.0151327  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_4916  CDS  NC_010676  1040879  1041358  +  480  type VI secretion system lysozyme-related protein  YP_001888650  hitchhiker  0.00677472  decreased coverage  0.00161069  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_4996  CDS  NC_010676  1136397  1137695  -  1299  CobB/CobQ domain protein glutamine amidotransferase  YP_001888730  decreased coverage  0.00105872  hitchhiker  0.00103041  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_5001  CDS  NC_010676  1141704  1145513  +  3810  cobaltochelatase subunit CobN  YP_001888735  normal  0.0676394  decreased coverage  0.00000811844  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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Bphyt_5080  CDS  NC_010676  1242291  1244339  +  2049  pyridoxamine 5'-phosphate oxidase-related FMN-binding  YP_001888814  normal  0.644036  decreased coverage  0.000684551  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_5393  CDS  NC_010676  1584884  1585780  -  897  MltA-interacting MipA family protein  YP_001889121  normal  0.11374  decreased coverage  0.00715974  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_5403  CDS  NC_010676  1594808  1595371  -  564  peroxiredoxin  YP_001889131  decreased coverage  0.000000000123087  normal  0.352797  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_5557  CDS  NC_010676  1763332  1763613  -  282  hypothetical protein  YP_001889281  decreased coverage  0.00843066  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_5592  CDS  NC_010676  1790899  1792035  -  1137  protein of unknown function DUF214  YP_001889312  decreased coverage  0.00756234  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_5598  CDS  NC_010676  1798569  1799834  +  1266  polyhydroxyalkanoate depolymerase, intracellular  YP_001889318  decreased coverage  0.00772774  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6219  CDS  NC_010676  2471969  2472400  +  432  Glyoxalase/bleomycin resistance protein/dioxygenase  YP_001889917  decreased coverage  0.00000185613  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6556  CDS  NC_010676  2846390  2847820  -  1431  selenocysteine synthase  YP_001890226  normal  0.0759041  decreased coverage  0.00101657  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6557  CDS  NC_010676  2847856  2848851  -  996  formate dehydrogenase accessory protein FdhE  YP_001890227  normal  0.232874  decreased coverage  0.000781967  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6575  CDS  NC_010676  2867705  2868553  +  849  GntR domain protein  YP_001890245  decreased coverage  0.00288971  hitchhiker  0.00502555  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6608  CDS  NC_010676  2914960  2915745  -  786  hypothetical protein  YP_001890277  decreased coverage  0.000362393  normal  0.327856  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6772  CDS  NC_010676  3104579  3105712  -  1134  porin Gram-negative type  YP_001890437  decreased coverage  0.00264492  normal  0.103826  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6787  CDS  NC_010676  3123570  3124919  -  1350  NADH dehydrogenase  YP_001890452  decreased coverage  0.0000879358  hitchhiker  0.00000494045  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6795  CDS  NC_010676  3133147  3134142  +  996  homoserine kinase  YP_001890460  hitchhiker  0.0000121347  decreased coverage  0.0000000680635  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6796  CDS  NC_010676  3134133  3134939  +  807  putative transmembrane protein  YP_001890461  decreased coverage  0.000000000273897  decreased coverage  0.0000000549645  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6797  CDS  NC_010676  3135112  3135564  +  453  transcriptional regulator, MarR family  YP_001890462  decreased coverage  0.0000000000341321  decreased coverage  0.0000000109708  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6798  CDS  NC_010676  3135739  3136158  +  420  OsmC family protein  YP_001890463  hitchhiker  0.000000000354891  decreased coverage  0.0000000499481  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6799  CDS  NC_010676  3136346  3137845  +  1500  Deoxyribodipyrimidine photo-lyase  YP_001890464  hitchhiker  0.00000114492  decreased coverage  0.000000135491  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6800  CDS  NC_010676  3137899  3138357  +  459  TspO and MBR like protein  YP_001890465  hitchhiker  0.000256464  decreased coverage  0.0000000665741  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6801  CDS  NC_010676  3138443  3138619  -  177  hypothetical protein  YP_001890466  normal  0.0122281  decreased coverage  0.0000000557857  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6802  CDS  NC_010676  3138728  3139924  -  1197  esterase, PHB depolymerase family  YP_001890467  normal  0.0419644  decreased coverage  0.000000125026  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6845  CDS  NC_010676  3194251  3196923  -  2673  hypothetical protein  YP_001890508  decreased coverage  0.000661999  normal  0.206537  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6890  CDS  NC_010676  3251156  3254899  -  3744  protein of unknown function DUF748  YP_001890553  decreased coverage  0.00167785  normal  0.283223  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6972  CDS  NC_010676  3348459  3349061  +  603  hypothetical protein  YP_001890632  decreased coverage  0.000000000112852  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_6973    NC_010676  3349079  3349183  -  105      decreased coverage  0.00000000000700074  normal  1  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_7033  CDS  NC_010676  3413637  3416252  -  2616  hopanoid biosynthesis associated RND transporter like protein HpnN  YP_001890692  normal  0.642403  decreased coverage  0.0000000105164  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_R0066  rRNA  NC_010676  904395  905920  +  1526  16S ribosomal RNA    hitchhiker  0.0000014714  decreased coverage  0.000000485963  Burkholderia phytofirmans PsJN  Bacteria 
 
 
-
 
Bphyt_R0071  rRNA  NC_010676  1148943  1150466  +  1524  16S ribosomal RNA    hitchhiker  0.000000123133  decreased coverage  0.0000133242  Burkholderia phytofirmans PsJN  Bacteria 
 
 
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