| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4913 |
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| Symbol | |
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| ID | 6279191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1038159 |
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| End bp | 1038707 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642615999 |
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| Product | type VI secretion protein, VC_A0107 family |
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| Protein accession | YP_001888647 |
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| Protein GI | 187919616 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000000468167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0151327 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA AAGAAAGCAT TCAGAAACGC TTGCAAAAAG TGCGGCCGCC CCGCGTTCAG
TTGACCTATG AGGTCGAGCG CGGCGATGCG ATCGAGGTGA AGGAGCTGCC GTTCGTCGTG
GGCGTGGTGG CCGATCTGGC GGGGCAGTCA GAAGTCGAGC AGCCGAAGCT GCGCGATCGC
AAGTTCGTCA ATATCGACCG CGACAACTTC GACGACGTGA TGAAGGCAAT CGAGCCGCGC
GCCGCGTTTC AGGTGGAAAA CCGCCTGAGC GAAGCCGGCG GCAAATTCGC GGTCGACCTG
CGCTTCAAGT CCATGGCCGA TTTCAATCCG GACGAAGTGG TCGCGCAAAT CGAACCGCTG
CGGCGCCTGC TCGAAGCGCG TTCGAAGCTC GCTGATCTGC GCAACAAGCT GGCCGGCAAC
GACAAACTCG AAGACCTGCT GAGCGAAGTG CTCAACAACA CGCAGCAGTT GCAAACCCTG
GCGAAAGACC AGAGCAACGC GGCGGACCAG CACGGCGGCG CGCCGGACCA CGACAAGCAC
GGCGAATAA
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| Protein sequence | MAKKESIQKR LQKVRPPRVQ LTYEVERGDA IEVKELPFVV GVVADLAGQS EVEQPKLRDR
KFVNIDRDNF DDVMKAIEPR AAFQVENRLS EAGGKFAVDL RFKSMADFNP DEVVAQIEPL
RRLLEARSKL ADLRNKLAGN DKLEDLLSEV LNNTQQLQTL AKDQSNAADQ HGGAPDHDKH
GE
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