| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6890 |
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| Symbol | |
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| ID | 6279258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3251156 |
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| End bp | 3254899 |
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| Gene Length | 3744 bp |
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| Protein Length | 1247 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642617917 |
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| Product | protein of unknown function DUF748 |
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| Protein accession | YP_001890553 |
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| Protein GI | 187921521 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00167785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.283223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAGCC TCAATAAAGC ATCATTAGCC TCGTCCATGC AGACCGTGCG CAATGTCGCG
CAGTCACGCC GCACCCGGCG TGTCATCACC GGTCTGCTGA TCTTCGTTGT ACTGTTTGGT
CTGTTGGGCT TCTTCGCGGC ACCGCCTCTG ATTCGCCACA TTGCCGAGCA ACAGCTCAGC
AAACAACTCG ACCGTCCCGC TACCATCGGC CGCATTGCGC TCAATCCGTA CACGCTCAAG
CTCGAAGCCG ACCGTGTACA TATCGGCGAG CGCGGCGGCG CTGGCGACTT CGTGGATATC
TCGCGGCTCA TCGTGCAGCC GTCGTGGAGT TCTCTGTTTC GCGCGGCGCC GATCATCGAC
GAAGTGCAGC TCGATTCGCC GCGCTTTCAT ATTGTTCGCT ACGATGCGCA GCGCTTCAAT
TTCACCGACC TGATCGAGAA ATTCTCGAAG CAGCCGGCCA AACCCGATAG CAAACCCACG
CTGTTCTCCG TGTCGAACAT CAGGCTCGAA AACGGCCAGA TCACGTTCGA CGACAAACTC
CTCGGCGCAA CGCATGTAAT CGATCAGTGG AAGCTCGGCA TTCCGTTCAT CGCCACGCTG
CCGTCGAAAA CCGATATCTT CGTCGAGCCG TTATTGCGTG CGCGGATCGA CGGCAGTCCG
CTTGCCATCG ACGGCAAGAC CAAGCCGTTC GCCGCGTCGC GCGAGTCGGA AGTGTCGTTG
CGTTTCGACG GGCTCGATGT GCCGCGTCTC ATGTCGTACG TGCCGACCAA GCTGCCGGTG
ATCGTGCAGT CCGGCAAACT GTCCACCGAT CTCAAGCTCA ACTTCGTGGT CTCCAACGAC
GCGCCTTCGC TGCGCGTGGC GGGCACCGTC GATATGAACG ACGTGGACGT GCAGGATCAG
AGCAAGGCGC CGTTCTTCGC GGCGCGCGCG CTGCATGTGG CCGCCGCGAC GCTCGAGCCG
TTGAAGAACC TCTATCACTT CGACGAGATC CGCATCGACG CGCCGACCGC CAATCTTGCG
CGCGATAAGG ACGGTGTGGT GAGCGTCGAG AAGATGTTCG CGCCCGCGCC CGCATCTGAA
GCCGCTGCGG CGCAACGGCC GGCGAGCGCG CCACTTGCCG CATCCGGTTC TGGGGCCGCG
GAAAAGACGG CGCCGCCGCT GGATCTGTCG ATCAAACGCC TGGTGCTTAA TGACGGCACC
GTGAACGTCC ACGACAACGC CGCCTCGCGG CCCGTCGACG TAGGTCTGCA AAAGCTGTTC
GTGACGCTGA CCGATTTTTC GACGCTCGCC ACCGCGCCTG CGCATTACAC GCTGAACACG
GATTTCAAGG ACGCCGGCGG CTCGCTCGGC GTGGCGGGCG CGTTCGGCCT CGTCGCGAAG
ACCGCGAGCG CGAAGGTCGA CATAAAGTCG TTGAAACTGC CGCTGTTGCA GCCGTATATC
GACACGGCGA CCGTCGCGCA GATCACGGAC GGCGCGTTAT CCGCCACCGC CAATGTCGGC
GCGAACTGGT CGAAGTCGCC GGCGGCGGTG ATGGTCACCG ACTCGCAACT GGACCTGCAA
TCGCTGAAAG TCGCGGCGCG CGACAGCAAG AATCCGCTGA TCTCGCTCGC CCAAGGCAGC
GTGAAGATCA AGCAGGTGGA TGTGGCGGCG CGCAACGCCG AGATCGCCAG CGTCGACACG
ACCGGCCTCG CGGTCGATGC GCAGCGTCTG AAAGACGGCG GCATCAACCT CGCCGCGCTT
GCCGGCCAGC GCGAAGCCGC GCCGCAGCGC ACCGCGATTC ACGCGGTCAA GAAGGCGCAG
GCGGAAGGCC CCGCGTGGCA CTACAAGATC GGCGAACTGA ACCTGAAGGA CGCCACCGCC
AATTTCACCG ACAACACCAC GCCGCAGCCG GTGAAACTGA ACATCACGTC GCTGCAGCTG
AAGGTGCAGA ACGTCAGCGA CGACCTCAGC CGTCCGTTGC CGATCGATTT GCAGGCAACG
CTGAACAGGA AGGGCACGCT CGGCGTAAAG GGCGACGTCA CGGCGACGCC GCTCAAGGTG
GCCGTCAAGG TGAACGCCAA CCGGCTCGAC GCGGCGGCCC TCGAACCGTA CTTCGGCAGC
AAGCTGAATG CGGTGGTCGC GAGCGCGCTG CTCAATGCGA ACGGCGACCT GACGCTGAAT
CAGGCTAAGT CGCTGAAAGC CAATTATCAC GGTGACCTGG CGCTCGTCGA AGTCCGCATG
CTCGACAAGG CGACTTCCGA CCCGTTCGCG GGATGGGGTT CGCTTGCATT GTCGAACCTG
AAGGCCGATT ACGACGAGCA CGGCACGGTG GTCGACGCGG GCCGCGTCAC GTTCACCAAG
TTCTATGGAC GCGTGCTGCT CGACGCGCAG GGCAAGCTCA ACCTGAAGGA CGTGGTCGCG
CACGAAACCG GTGCCGCGCA ATCGCTCACG CGCGACAAGA GCGGTGCCGA ACCCGTGCCG
TTGACGCCGC AACCGGCGTC GGCGGTCGCG GCCGCGCCGG CTCCATCATC GGCTGCGCCT
GCCACGGTGA CGGCGGCCAC GCCGCCGTCG AGCCCGGTCA AGCTCCACTT CGGCCAACTG
GTGCTGCAGC AGGGCCGTGT GACGTACACC GACAACTTCA TCAAGCCGAA TTTCACGGCA
AACCTGGTCA ACATTCAGGG CACAGTCGGC GCATTCGGCA CGCAGTCCAC TACGGACGCG
CCGGTCGACA TCGCCGCTAA ACTGGCGGCC AATGGCCCGC TCTCGATTCG CGGCACGGTC
AATCCGCTGA TCGCGAAACC GGCGCTCGAT CTGACGGCGG TCGCGCATGA TATCGAGTTG
ACCAATCTCA CGCCGTATTC GGCGAAATAT GCCGGTTATC CGATCACCAA GGGCAAGCTG
AACGTCGATC TGCACTACAA GCTGGCGAAC GATCAGTTGG ACGCGAACAA CCACATCTTC
ATCGACCAGC TCACGTTCGG CGATCACGTC GATAACGATA CGGCGACCAA GCTGCCTGTG
CGGCTCGCAA TCTCGCTGCT GAAGAACTCG CGCGGCGAAA TCGACGTGAA CCTGCCGGTG
TCGGGCTCGC TGTCGAATCC CGAGTTCAGT ATTGGCGGCC TGATCTGGCA TGCCGTGCTC
AACCTGCTGC AGAAGGCGGT GACCGCGCCG TTCTCGCTGA TCGCCAACGC GTTCGGCGGC
AAGGGCGAGG AGTTGGGCTA CGTCGAGTTC GAACCCGGCT CGGCAAAACT CACGGACGCC
GACAACCAGA AACTCGACAC GATCGTGAAG GCACTGTCCG ACAAGCCATC GATCCGTATG
GATTTGATCG GCCGCGTCGA TCCGGCGGTC GACGAACCCG CGTTGCGCAC CGGCTATGTC
GATCGCCTCG TCAAGCAGCA GAAGATCAAG GACGTGGTGG GCAACGGCGA GAGCGTCGAT
CTCTCGACCG TCACCGTCGA CCCGAAGGAC TACGACAAGT ATCTGAGCAA GGCCTACAAG
TCGGCGGACT TCAAGAAGCC GCGCAATTTT GTCGGCCTGA CCAAGAGCTT GCCGGACGAC
GAGATGAAGA GCGCGCTCGC CGCCAACGCC CCGATCGACG ACGCCAGCCT GCGGCAACTC
GCGCAGCAAA GGGCGCAGAG CGTGCAGCAG TATCTGGACG GCAAGATCGA CAGCAGCCGC
GTGTTTATCG TCGCGCCGAA GCTGAACGCC GACGGCATCA AGGACAAGGG CGCAACGACG
CGGGTCGACT TCGGTTTGAA GTGA
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| Protein sequence | MASLNKASLA SSMQTVRNVA QSRRTRRVIT GLLIFVVLFG LLGFFAAPPL IRHIAEQQLS
KQLDRPATIG RIALNPYTLK LEADRVHIGE RGGAGDFVDI SRLIVQPSWS SLFRAAPIID
EVQLDSPRFH IVRYDAQRFN FTDLIEKFSK QPAKPDSKPT LFSVSNIRLE NGQITFDDKL
LGATHVIDQW KLGIPFIATL PSKTDIFVEP LLRARIDGSP LAIDGKTKPF AASRESEVSL
RFDGLDVPRL MSYVPTKLPV IVQSGKLSTD LKLNFVVSND APSLRVAGTV DMNDVDVQDQ
SKAPFFAARA LHVAAATLEP LKNLYHFDEI RIDAPTANLA RDKDGVVSVE KMFAPAPASE
AAAAQRPASA PLAASGSGAA EKTAPPLDLS IKRLVLNDGT VNVHDNAASR PVDVGLQKLF
VTLTDFSTLA TAPAHYTLNT DFKDAGGSLG VAGAFGLVAK TASAKVDIKS LKLPLLQPYI
DTATVAQITD GALSATANVG ANWSKSPAAV MVTDSQLDLQ SLKVAARDSK NPLISLAQGS
VKIKQVDVAA RNAEIASVDT TGLAVDAQRL KDGGINLAAL AGQREAAPQR TAIHAVKKAQ
AEGPAWHYKI GELNLKDATA NFTDNTTPQP VKLNITSLQL KVQNVSDDLS RPLPIDLQAT
LNRKGTLGVK GDVTATPLKV AVKVNANRLD AAALEPYFGS KLNAVVASAL LNANGDLTLN
QAKSLKANYH GDLALVEVRM LDKATSDPFA GWGSLALSNL KADYDEHGTV VDAGRVTFTK
FYGRVLLDAQ GKLNLKDVVA HETGAAQSLT RDKSGAEPVP LTPQPASAVA AAPAPSSAAP
ATVTAATPPS SPVKLHFGQL VLQQGRVTYT DNFIKPNFTA NLVNIQGTVG AFGTQSTTDA
PVDIAAKLAA NGPLSIRGTV NPLIAKPALD LTAVAHDIEL TNLTPYSAKY AGYPITKGKL
NVDLHYKLAN DQLDANNHIF IDQLTFGDHV DNDTATKLPV RLAISLLKNS RGEIDVNLPV
SGSLSNPEFS IGGLIWHAVL NLLQKAVTAP FSLIANAFGG KGEELGYVEF EPGSAKLTDA
DNQKLDTIVK ALSDKPSIRM DLIGRVDPAV DEPALRTGYV DRLVKQQKIK DVVGNGESVD
LSTVTVDPKD YDKYLSKAYK SADFKKPRNF VGLTKSLPDD EMKSALAANA PIDDASLRQL
AQQRAQSVQQ YLDGKIDSSR VFIVAPKLNA DGIKDKGATT RVDFGLK
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