| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5598 |
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| Symbol | |
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| ID | 6278501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 1798569 |
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| End bp | 1799834 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642616675 |
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| Product | polyhydroxyalkanoate depolymerase, intracellular |
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| Protein accession | YP_001889318 |
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| Protein GI | 187920287 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
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| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00772774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGTATG ACCTACTCGA TATACAGCGT CGCCTCGCCA AAGCGTTCAT CGATGCCGCG
CTCACCGTCA GCGGATTGGA TGGCGCTCAG TGGGGGACAG CCGGCGCACC CCGTGCCGCG
CGCGATTGGC TGATCCGGTC CACATGCGCC TTTGAAACCG CTCCGCCGTT CGCGATAAAA
GCGGTGCACA GCAACGGCAA ATATCTTCCC GTGGAAGAAA GCATTGCCGA CGAAATGCCG
GTCGGCACGC TGCGCAAATT CACACGTAGC AGCTGTGTTG CCGACCCGCC CGGGACGCGC
CCCATTATTC TCTGCGCTCC GCTCGCGGGC CATCACGCAG TGATGCTGCG GGAAACGGTC
GAAACATTGC TCGAACGCTG CAACGTCGTC TACATCACCG ACTGGGCCGA CGCGCACGAC
GTGCCGCTCG AAGCCGGCCC GCTTCCATTG ACGGACTACG TCCACGCGCT CGAACGCTTC
ATTTGCACGG TGCGGGCAGG CGGAGCGCCG GCGCATGTCG TCGCCGTCTG CCAGGCCTGT
GTCCCCGCCC TCGCCGCCTG CAGTCTGCTG GCAAGCAACG GGACACCGCC GTTCGCCAGT
GTCTCGCTGC TTGGCGGACC GATCGACACC CGCCTGCATC CGACTTCCGT GGATCGCTTT
GCAAGCGCGC AGCCGTTACG CTGGTTTCAC GATCGTGTAA TCGACGAAGT GCCGCCGCCA
TACGCCGGGG CGGGACGCCG TGTCTATCCG GGTTTCATGC AGCAGGTTGC CATCCTGGCT
GCGCACCCCG CGCGTCAACT CGATCTGGAG GCGCGCTACT GGACGAATTG GCTCGGGGGC
AATCTGCACG ACGCGCAAAC GGCGCTTCGT TCGCTGAACG AGTATGCCGC CGTGCTTGAC
ATGGGCGAAC GTTACTTTCT GGATATGCTC AGCGTAGTCT TCCACGAGCA CCTGCTTGCG
CGAGGAATGT GGGTAATCGA TGGGCGGTGC GTGGATCCCC GCGTCCTCGA TCAAGTGCCG
CTCTGCACGA TCGAGGGCGA CCGCGACGAC ATTACGGGCG CGGGCCAGAC GCATTGCGCG
CACGCGCTAT GTCATGCACC GGGCGCGCCG GGGCATCGGC GCGTGACCAT CGATCAATGC
GACCATTACG ACCTGTTCAC GGGTCCGCGC TGGCACGACG CGGTTCATCC TGAGTTATGC
AGCTTCTGGC GCGCGATCGC ATGCGATAGT GAAGCGAAAG CCGCGCCGGC CGCCAGCATT
CGATGA
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| Protein sequence | MWYDLLDIQR RLAKAFIDAA LTVSGLDGAQ WGTAGAPRAA RDWLIRSTCA FETAPPFAIK
AVHSNGKYLP VEESIADEMP VGTLRKFTRS SCVADPPGTR PIILCAPLAG HHAVMLRETV
ETLLERCNVV YITDWADAHD VPLEAGPLPL TDYVHALERF ICTVRAGGAP AHVVAVCQAC
VPALAACSLL ASNGTPPFAS VSLLGGPIDT RLHPTSVDRF ASAQPLRWFH DRVIDEVPPP
YAGAGRRVYP GFMQQVAILA AHPARQLDLE ARYWTNWLGG NLHDAQTALR SLNEYAAVLD
MGERYFLDML SVVFHEHLLA RGMWVIDGRC VDPRVLDQVP LCTIEGDRDD ITGAGQTHCA
HALCHAPGAP GHRRVTIDQC DHYDLFTGPR WHDAVHPELC SFWRAIACDS EAKAAPAASI
R
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