| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4177 |
|---|
| Symbol | |
|---|
| ID | 6278187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 221214 |
|---|
| End bp | 222383 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642615276 |
|---|
| Product | protein of unknown function DUF993 |
|---|
| Protein accession | YP_001887929 |
|---|
| Protein GI | 187918898 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.455034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000150166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGT CTATCAAACT TCCGGCCGCG TCCGGCACGA TGGAAACATA TCGCGTAGAA
GGCGCGCCGC TCGAGGTACG CTCGCCCGCG CGCGCTTTCA ACCGCATCGC GTATTCCGCG
GCGCACGTGG TAGCTGATCC GCTGCGCGCG GGCGAACTGA ATGGCGCGCC CGCCATCGAC
TGGGAGCGCA CGATCGCTTA CCGGCGCTAT CTGTTGCAGC AAGGTCTCGG CATCGCCGAA
GCGATGGACA CCGCGCAGCG CGGCATGGGC TTGCCGTGGA GCACCGCGCT CGAACTGATC
ACGCGCAGCA TTGAGGGCAC GCGCGACATT CCGGGCGCGG CCATCGCGTC GGGTTGCGGC
ACGGACCACA TTGCGCCCGC TTCGGTCACG AACTGCGATC AGGTGATCCG CGCGTATGCC
GAGCAACTCG AGGCAGTGCA GCGCGTGGGC GGCCGCGTGA TCCTGATGGC GAGCCGCGCG
CTCGCGCGGG TTGCGCGCAC GCCGGACGAT TACCGGCGCG TGTATCGCGA AGTGCTCGCC
ATGTGCGATC AACCGGTGAT TCTGCATTGG CTCGGCGAGA TGTTCGACCC CGAACTCGCG
GGCTACTGGG GCGCCAATGA ATTTGCCGAC GCGGCGCAGG TGTGTCTCGA CATTATCGGC
ACGAGTGCGT CCAAGGTCGA CGGCATAAAG ATCTCGCTGC TCGACGAGCA GAAAGAAATC
GCGTTCCGTC AGCGCCTGCC GCACGGCGTA AAAATGTACA CCGGCGACGA CTTCAACTAT
CCCGCGCTGA TCGCCGGAGA CGGCATGCAT TTCTCGCATG CTTTGCTCGG CATCTTCGAC
GCGATTGCGC CGGCCGCGTC GCAGGCATTG TCCGCGCTTG CCGCGAACGA TCACGCCAGT
TTCAACGCCT TGCTCGCGCC GACCGTGCCG CTTTCGCGCC ACATCTTTCG CGCGCCGACG
CAGTACTACA AGACGGGCGT GGTGTTCCTC GCGTACCTGA ACGGCTTCCA GGATCACTTC
TTCATGCCCG GCGGCCACCA TGGCATGCGT CCGCCCGCCT ACCTCGCCGA CGTCTTCCGC
CTCGCCGATC AAGCCCGGCT TCTGCGTGAT CCCGCGGATG CCGTCGCGCG CATCTGCCGC
GTCATGGCGC CCCTCGGTTG CGGAGACTGA
|
|---|
| Protein sequence | MNLSIKLPAA SGTMETYRVE GAPLEVRSPA RAFNRIAYSA AHVVADPLRA GELNGAPAID
WERTIAYRRY LLQQGLGIAE AMDTAQRGMG LPWSTALELI TRSIEGTRDI PGAAIASGCG
TDHIAPASVT NCDQVIRAYA EQLEAVQRVG GRVILMASRA LARVARTPDD YRRVYREVLA
MCDQPVILHW LGEMFDPELA GYWGANEFAD AAQVCLDIIG TSASKVDGIK ISLLDEQKEI
AFRQRLPHGV KMYTGDDFNY PALIAGDGMH FSHALLGIFD AIAPAASQAL SALAANDHAS
FNALLAPTVP LSRHIFRAPT QYYKTGVVFL AYLNGFQDHF FMPGGHHGMR PPAYLADVFR
LADQARLLRD PADAVARICR VMAPLGCGD
|
|---|
| |