| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6845 |
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| Symbol | |
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| ID | 6279551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3194251 |
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| End bp | 3196923 |
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| Gene Length | 2673 bp |
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| Protein Length | 890 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642617872 |
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| Product | hypothetical protein |
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| Protein accession | YP_001890508 |
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| Protein GI | 187921476 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3064] Membrane protein involved in colicin uptake |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000661999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.206537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTTC GACTCTCATC CCTTCGGGCT ATGTTCAATC TTCCGGGTGC GAGCCGATTG
ACGGCCGCCG CCGCTGTGTC CGCCGCGCTT GTGTGCGCTG GCATGGGCAG CGCGGCCGCC
GCACCGGGCG ATGCCGCGAG CGCACCGGAC GCCGCCTCCG TTTCGTACGC GAACGGTGGT
CAAGTGACGG TGCGGCCTGG GCAGTCGCTG AACGACGTGG CGATTGCCGT CACGCAGTCG
CACGACAAGG CGACGCTCGC ACGTGCCTCG CGCGCGTTGT TCGATGCGAA CCCGAATGCC
TTCATGAGCC ACGACCCGAG CCGGTTGCGG CTGGGTGCGG TGTTGACGGT GCCGGTGCTG
GATGCGTCGG GTGCGCTGGC GGCGTCGGCG GCGGGTGTCG CGGCTGCGCC TGCCTCGGCG
CCTAATGCGG CATCTGCGAC TAGCGCGGCG AGTGCCGTGG CGCAGGCCAA CGCGGCGGCG
GCAAGCGCAG CAAGCGCTGC GGCGCCAGCC GCCCCCGCTG TTTCTGCGAT GGCCAGTGCG
GCCACTGAAG CGAGTTCGGC GACGCCGGGT AGCACGGCTT CGTCGGCGCC GATCGCGGGA
TCTCAGGCGG CGGCATTGCC GGCCAGCGGT ACTCATGCGT GGTCCGGTTC GATTCAGCCG
TCAGCTAGCG AGGCTGAAGG CGCATCAGCG GCTGGTGCCG GAACGACTCC GGCGACGACC
GCCGCGCAGC CGGCATCGCA ACCGCGTGCG CAAGTGTCGA GCCTGCAGCA ATTGCTCGCG
CTGAAAAATC GCGTGCTGAT GGAGTTGCAG AAACACGGTA TCGGCGGGAC GCCTCCCGCT
ACGAACACGG CGTCGACCGG CGTCGCGCAA CCGGCGGTTG GCGTGTCATC AGCGGCGGCT
GTGCCGAGTC ACGGCTCTAC GCCCGTGGCA TCGACGTCGA GTGGTGCTGG CATGTCGCAG
ACGGAGTTGA GCGTGGCGGC GGCGATTGGC GCGGCGCTGG TCGCGTTGCT GGCGGCGCTG
CGCATGGGCC GGCGTAAGCG CGAACGTCTG GCGGCGGAAG CTGCGTCGGC GGATGGCGGT
GGGGCGGCGT CCGCGCGGGC AACGGGCCCG CAGGACGTCG TGTCGACGCG CGAGCAGATT
CCGGCGCGCG GAGCGTCGGA TGTCGGCGAT GATTTGCCCG TTGGAAACGC GGCGGCATTG
GCGGCTGCGG AGCGTGAAGC TGCGGAAGGC GACGCGGCGG CGCGTGAAAT GGAAGAACGG
GTCGCGGCGG AGCGCGACGC GGAGATTCGT CAGGCCGCTG CGCGGGAGGC GGCGGAAAAA
GCAGAAGAGC AGGCTGCGGC TGAACGTGCG GCAGCAGAGC AGGCAGCGGC CGAGCACGCG
GCAGCGGAAC GTACGGCAGC AGAGCAGGCA GCGGCAGAGC ACGCGGCGGC GGAACGCACT
GCAGCGGAGC AAGTAGAGGC TGAACACGCA GCAGCAGAAC GCACGGCAGC AGAGCAGGCC
GAAGCCGAGC GCGCAGCAGT AGAACGCGCA ATCGGGGAAC GTGCAGCAGA AAATCAACCC
GCTGCAGCCC ACACGACCTT CCCGTCACCC GGCCTCAACG CGCCCGACCA CATCTCGCAA
GAGCGCGACG CCGCGCCCGC ATCCGTCGAA CCTGCGCAAT TGAGTCCGAA CGTCGCTCCG
TCCGCTCAGG GCGGTTCGAT TCCGGAACCT CTCCCCGGGC CCCACCACGA CGACTTCGAC
AGCGCGACCA CGGCCGCAAG TCTTGCCGCC GCTGCGGAAC TCGGCGCCGA CGCCTTGCCG
CTGACGCCGC TTGAGCCCGT CGACGACGCC TTCCTGCACG AGGAACCCGC TCATCGTCTG
CAATGGGACG ATACGCCGGC CGCGCGGCTC GAGCCGTCGA TCGAATCGCA GCGCCATCTG
AACGTGCCGC CAGTCGATCT CCAGCAGCCG CACGTCGAGC CGCAGTCAAC TCCGGCGTTC
AGTCAGTCTC ACAGCGATGC GGCTTCGCCA GCTGAGCCGT TGCAGGACGA GGCGCAGCGA
GCGCATAGTG AACTGGCGCA GGAGCCGCAT CAACCGGTTC AAACGTTACC GTCCGATGCC
TCGCCGACCC GCGAGCCAGA ACCGCGAGCG CAGCCCGCAC CCGCAGCCGT GCCGACCGAA
TTCCCGCGCG ACGCCGTCGA TGCGTTCGGC AGCCTCGACA TGCCGTTGCC GCCGCGCGTC
GAGTCGTCCG CCGATGCCTT GCAAGCGCCC GCCTCACTGT CGAGCCAGCC GGTGGCGTCG
CCGGAAACCA CTGCACAACA GGCTGTGCCG TTGCCCGACC CGGACGAGAC GCCGCACGTT
GCCGACGAAA TCACCGCGGG CACCGCAGGC CACGCGTCCG TCGCAGGCTT GGGCGCGGGG
TTTGGCACGG GCCTGGGTGC GGCCGGCTTC GGCGCGTTGA AGCTCGATTT CGATCTCGAG
TTGCCGCCGA GCCCGGCCCA GCCGTTGCCG GCGTTCACGC AGAACGATCT CAGCCGCATC
GCCCGCAATA AGCTCGAACT GGCGGCCGAA TACATCGAGC TGGGCGATCT GTCCGGCGCG
CGCGCGCTCA TCAACGAAGT GATCGAGACG AACGATCCGG GTACGCGCAC CGAGGCCCGC
GCGTTGCTCT CGACGCTCGC CCCGTTGTCG TGA
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| Protein sequence | MNLRLSSLRA MFNLPGASRL TAAAAVSAAL VCAGMGSAAA APGDAASAPD AASVSYANGG
QVTVRPGQSL NDVAIAVTQS HDKATLARAS RALFDANPNA FMSHDPSRLR LGAVLTVPVL
DASGALAASA AGVAAAPASA PNAASATSAA SAVAQANAAA ASAASAAAPA APAVSAMASA
ATEASSATPG STASSAPIAG SQAAALPASG THAWSGSIQP SASEAEGASA AGAGTTPATT
AAQPASQPRA QVSSLQQLLA LKNRVLMELQ KHGIGGTPPA TNTASTGVAQ PAVGVSSAAA
VPSHGSTPVA STSSGAGMSQ TELSVAAAIG AALVALLAAL RMGRRKRERL AAEAASADGG
GAASARATGP QDVVSTREQI PARGASDVGD DLPVGNAAAL AAAEREAAEG DAAAREMEER
VAAERDAEIR QAAAREAAEK AEEQAAAERA AAEQAAAEHA AAERTAAEQA AAEHAAAERT
AAEQVEAEHA AAERTAAEQA EAERAAVERA IGERAAENQP AAAHTTFPSP GLNAPDHISQ
ERDAAPASVE PAQLSPNVAP SAQGGSIPEP LPGPHHDDFD SATTAASLAA AAELGADALP
LTPLEPVDDA FLHEEPAHRL QWDDTPAARL EPSIESQRHL NVPPVDLQQP HVEPQSTPAF
SQSHSDAASP AEPLQDEAQR AHSELAQEPH QPVQTLPSDA SPTREPEPRA QPAPAAVPTE
FPRDAVDAFG SLDMPLPPRV ESSADALQAP ASLSSQPVAS PETTAQQAVP LPDPDETPHV
ADEITAGTAG HASVAGLGAG FGTGLGAAGF GALKLDFDLE LPPSPAQPLP AFTQNDLSRI
ARNKLELAAE YIELGDLSGA RALINEVIET NDPGTRTEAR ALLSTLAPLS
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