| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4184 |
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| Symbol | |
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| ID | 6277752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 230445 |
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| End bp | 231524 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642615283 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_001887936 |
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| Protein GI | 187918905 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000111961 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACAGAC AGGATCAACG CGCAGGCGTA TCACGCCGCG ACTTCATCAA GCTTGGCGCG
GGCGCGGCAT TTGCCGTGGC GGGCGGCGGC ATGTCCGGCC TCTCGTTCGG TGCGGGGCAG
ACCACGCTCG CCTGCTCGTT CCGTTCATTG ACCAACCCGT ATTACACGGC ATTCAACAAG
GGCGCGCAGA GCTTCGCGAA GAGCGTCGGC CTGCCGTATG TGCCGCTCAC GACAGAGGGC
AGTTCCGAGA AAGGCATCGC GGATATCCGG GCGTTGTTGC AGAAGACCGG CGGCAATCTC
GTGCTCAACG TCGACCCGAA CGATTCCGCC GATGCACGCG TGATCGTCGA GGCCTGTTCG
AAGGCCGGCG CGTATGTCAC GACGATCTGG AACAAGCCGA AGGATTTGCA CCCGTGGGAT
TACAACCCGA ACTACGTGGC GCATCTTTCA TACGACGGCG TCGCGTACGG CGAGGAAACG
GCCACGCAGC TCTTCAAGTC GATGGGTGGC AAGGGCGGCG TGGTCGCGCT CGGCGGTATC
TTCAGCAACG TGCCGGCGAT CGAGCGCAAG GCCGGGCTCG ATGCAGCGTT GAAGAAGTTC
CCAGGCATCC AGTTGCTCGA TTTCCAGGTC GCCGACTGGA ATTCCCAGAA GGCGTTTCCC
ATCATGCAGG CGTGGATGAC GCGCTTCAAT TCGAAGATCA AGGGCGTGTG GGCCGCGAAC
GACGACATGG CGCTCGGCGC GATCGAAGCT TTGCGCGCCG AAGGTCTCGC CGGTCAGATT
CCGGTCACTG GCATGGACGG GACCCAGCCG GGGCTCGTCG CGATCAAGAG CGGCGAGCTG
GTTGCATCGG TCGATTGGGA CCCGTTCTGG CTCGGCGGCA TCGGCCTCTC GATGGGGCTC
CAGGCGAAGG AGAAGAAGAT CGACCTGGCG ACGCTGCCCA AGGACCGCCG TGAGTCGTTC
TGCACCGCGA CGTTCGTCAC GAAGACCAAC GTTCAGGACG TGATCGCGCG CGCCGCGTCT
CCGAAGGCGG AATGGAACAA CCTTTATGCC CGCGTTGCGG GGCCAGTGGT GTATCGATGA
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| Protein sequence | MNRQDQRAGV SRRDFIKLGA GAAFAVAGGG MSGLSFGAGQ TTLACSFRSL TNPYYTAFNK
GAQSFAKSVG LPYVPLTTEG SSEKGIADIR ALLQKTGGNL VLNVDPNDSA DARVIVEACS
KAGAYVTTIW NKPKDLHPWD YNPNYVAHLS YDGVAYGEET ATQLFKSMGG KGGVVALGGI
FSNVPAIERK AGLDAALKKF PGIQLLDFQV ADWNSQKAFP IMQAWMTRFN SKIKGVWAAN
DDMALGAIEA LRAEGLAGQI PVTGMDGTQP GLVAIKSGEL VASVDWDPFW LGGIGLSMGL
QAKEKKIDLA TLPKDRRESF CTATFVTKTN VQDVIARAAS PKAEWNNLYA RVAGPVVYR
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