| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7033 |
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| Symbol | |
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| ID | 6278928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3413637 |
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| End bp | 3416252 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642618056 |
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| Product | hopanoid biosynthesis associated RND transporter like protein HpnN |
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| Protein accession | YP_001890692 |
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| Protein GI | 187921660 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4258] Predicted exporter |
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| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.642403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000105164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCTGAAGT CATCTATTGT CCGTCTCGTC GCGTATTCAG TGCGTCATCC GTTAAAGGTC
GTCGCGCTGT CGCTCGTGCT CGCCGTTCTG AGCGGTTTCT ACGTTGCCTA TAACTTCAAG
ATCAACACGG ACATCAGCCG TCTCATCGAG AACGACAAGC AATGGTCGGC GCTCGAACAC
GCTGTGGACG AGGCCTTCCC GGATCGCGGC CAAACCGTGC TGGTGGTCGT CGAAGCGCGC
GCGCCGGAAT TCGCCGATGC CGCCGCGCAA GCCCTGACCA CGGCTCTCAA AGCCGATCCC
AAGGAGTTCG TGGCGGTTTC GCAGCCGGCC GGCGGCCCGT TCTTCGAACA CAATGGCCTG
CTGTTCCCGT CCCTCGACGA GGTCATGTCG ACCACCTCGC AGCTCGTCCA GTCGCGCCCG
CTCGTCAACG CCCTCGCCCA CGATCCGAGC CTGACCGGCC TTGCCGGCAC GCTGACCACG
AGTCTGTTGC TGCCGCTTCA GCTCGGTCAG GTGAAGCTCG GCGACATGAG CCATCTGCTG
TCGCAAAGCG CGAGCACGCT CGACCGCGTG CTGGCCGGCC AGCCGGCCGC CTTCTCGTGG
CGCGCGCTGG TCGACAAGAG CGCGGCTGCC GAGCCCGCGC GCGCCTTCGT CATCGTGCAG
CCGGTCGTGA ACTACGACGC GCTGGAGCCG GGCGCGTCGG CGTCGAAGTC GATCCGCGAC
ACCGCCGCCG CGCTGCACCT CGAATCGCGC TACGGCGCTA TCGTCCGTCT GACCGGCGAA
CAGCCGCTCG CCGACGAAGA GTTCGCTTCG GTCAAGGACG GCGCGGCGCT CAACGGTATC
GGCACCTTCA TCGTCGTGCT GATCATTTTG TGGCTGGCGC TGCGCTCGGG CCGCATGATC
GCAGCCGTGT TCATCACGCT GTTCGTCGGA CTCGCGATCA CGGCGGCGCT CGGCTTGATG
CTGGTGGGCG CGCTCAACAT GATTTCGGTC GCCTTCATGG TGCTGTTCGT CGGGCTCGGG
GTCGATTTCG GCGTGCAGTT CGGCGTCAAG TATCGTGAGG AGCGCAATCG CGATAACCGG
CTTTCCGCTG CGCTGATGCA CACGTCGCAC AGTATCGGCG TGCCGCTCAC GCTCGCCGCG
ATCGCGGTCG CATTGAGCTT CTTCTCGTTC CTGCCGACGG CTTACCGCGG CGTGTCCGAG
TTGGGCGAGA TCGCGGGCGT CGGCATGTTC GTCGCGTACT TCACCAATAT GACTTTGCTG
CCGGCCCTGC TGAAGATTTT CAGGCCGCCA GGCGAAGCCG GTTCGCCCGG CTTCAAGCAA
CTCGCGCCCG TCGACGATTT TCTCGATCAT CATCGCAAGC CGGTGCTGAT CGGCACGCTG
ATCGTCGTGA TCGGCGCCTC GCCGTTGCTC ACGCATTTGC GCTTCGACTT CAACCCGCTG
CATCTGAAGG ACCCGCATAC GGAGTCGATG GAGACGCTGT TGTCGCTGAA GGACTCGCCG
GAGGCCGCGG TCAACAACGT GCATGTGCTC GCGCCCTCGC TCGCCGACGC CGACCGCATG
GCCGCCCATC TGCGCACATT GCCGGAAGTG GGCCGCGTCA ACACGCTCGA CACCTTCGTT
CCCGCCGACC AGCAGCAGAA GCTGATGCTG ATCGCGAGCG CCGCGCAGCA GCTATTGCCC
GCGCTGCAGC AGCAGCCCGC GCAGCAGGCA ACGGACGCTA TCCGCGTCGC CGCGCTCAAG
CGCGCGTCGA ACCAGCTCTC GCTCGCCGCC GACGATCACC CGGGCCCCGG CGCCGCCGAA
GCCAAGCATC TGTCCGCCAC ATTGCAGAAG TTAGCCGCCA CCGACGCCGC CACGCGCGAT
CGCGCCGAAA CCGCGATGTC CGAGACGCTG CGCATTGCGT TGAAGCAGTT GGCCAACCTG
CTGCAACCCA CCGAGATCAC CTACGAGAAT CTGCCCAAGG AAATCTCCAA GGCCTGGGTC
TCGAAGGACG GCCGCGCGCT CGTCGACATC TCGCCGAAAG TGAAGCCCGG CACCGATCCG
AACGACGACG TCATGCTCGC CCACTTCGCC CACGCGGTGA AGAAGGCGGA GCCGGGCGCG
ATCGGCGGGC CGATCTCGAT CCTGCATTCC GCCGATACCA TCATCAAGGC GTTCCTGCAG
GCCGCCGGCT ACGCGCTCGT CTCGATTGCA ATCCTGCTGT GGATCGCCCT GCGGCGCGTC
GGCGACATGC TGCGCACGCT GGTTCCGCTG CTGGTATCGG CGCTCGTGAC GCTCGAGTTG
TGCGTGGTAT TCGGCATGCC ACTGAACTTT GCGAATATCA TCGCTTTGCC GCTGATGCTC
GGCGTCGGCG TAGCGTTCAA GATCTACTTC GTGATGGCGT GGCGCCACGG TCAGACTGGT
CTACTGCAGT CGAGCCTGAC CCACGCTGTG CTGTTCAGCG CGGCGACCAC GGCGACGGCG
TTCGGCAGCC TCTGGCTGTC GCACCATCCG GGGACGTCGA GCATGGGGCG CTTGCTGGCG
CTCTCGCTGT TCTGCACACT GATCGGCGCA GTGGTGTTTC AACCCGTGTT GATGGGCAAG
CCGCGCTCAC GTCGCGCGAA GCAAAAAGGA ATATAA
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| Protein sequence | MLKSSIVRLV AYSVRHPLKV VALSLVLAVL SGFYVAYNFK INTDISRLIE NDKQWSALEH
AVDEAFPDRG QTVLVVVEAR APEFADAAAQ ALTTALKADP KEFVAVSQPA GGPFFEHNGL
LFPSLDEVMS TTSQLVQSRP LVNALAHDPS LTGLAGTLTT SLLLPLQLGQ VKLGDMSHLL
SQSASTLDRV LAGQPAAFSW RALVDKSAAA EPARAFVIVQ PVVNYDALEP GASASKSIRD
TAAALHLESR YGAIVRLTGE QPLADEEFAS VKDGAALNGI GTFIVVLIIL WLALRSGRMI
AAVFITLFVG LAITAALGLM LVGALNMISV AFMVLFVGLG VDFGVQFGVK YREERNRDNR
LSAALMHTSH SIGVPLTLAA IAVALSFFSF LPTAYRGVSE LGEIAGVGMF VAYFTNMTLL
PALLKIFRPP GEAGSPGFKQ LAPVDDFLDH HRKPVLIGTL IVVIGASPLL THLRFDFNPL
HLKDPHTESM ETLLSLKDSP EAAVNNVHVL APSLADADRM AAHLRTLPEV GRVNTLDTFV
PADQQQKLML IASAAQQLLP ALQQQPAQQA TDAIRVAALK RASNQLSLAA DDHPGPGAAE
AKHLSATLQK LAATDAATRD RAETAMSETL RIALKQLANL LQPTEITYEN LPKEISKAWV
SKDGRALVDI SPKVKPGTDP NDDVMLAHFA HAVKKAEPGA IGGPISILHS ADTIIKAFLQ
AAGYALVSIA ILLWIALRRV GDMLRTLVPL LVSALVTLEL CVVFGMPLNF ANIIALPLML
GVGVAFKIYF VMAWRHGQTG LLQSSLTHAV LFSAATTATA FGSLWLSHHP GTSSMGRLLA
LSLFCTLIGA VVFQPVLMGK PRSRRAKQKG I
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