More than 300 homologs were found in PanDaTox collection
for query gene Sked_01880 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_01880  carbohydrate ABC transporter membrane protein  100 
 
 
318 aa  629  1e-179  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  47.14 
 
 
303 aa  253  2.0000000000000002e-66  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  44.67 
 
 
310 aa  252  6e-66  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_010524  Lcho_3242  binding-protein-dependent transport systems inner membrane component  43.99 
 
 
317 aa  236  5.0000000000000005e-61  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_1775  binding-protein-dependent transport systems inner membrane component  42.71 
 
 
309 aa  231  1e-59  Nakamurella multipartita DSM 44233  Bacteria  normal  0.114297  normal  0.0929805 
 
 
-
 
NC_011886  Achl_1752  binding-protein-dependent transport systems inner membrane component  42.02 
 
 
314 aa  224  1e-57  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000089983 
 
 
-
 
NC_013172  Bfae_07470  carbohydrate ABC transporter membrane protein  42.91 
 
 
304 aa  216  4e-55  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3385  binding-protein-dependent transport systems inner membrane component  40.57 
 
 
313 aa  207  1e-52  Arthrobacter sp. FB24  Bacteria  normal  0.359427  n/a   
 
 
-
 
NC_009667  Oant_2484  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
318 aa  169  5e-41  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.575298  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
295 aa  168  1e-40  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
308 aa  166  5.9999999999999996e-40  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
305 aa  165  8e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
306 aa  164  2.0000000000000002e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  37.63 
 
 
316 aa  163  3e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_1900  sugar ABC transporter, permease protein, putative  33.07 
 
 
314 aa  162  5.0000000000000005e-39  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1635  sugar ABC transporter, permease  33.07 
 
 
314 aa  162  5.0000000000000005e-39  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  31.93 
 
 
315 aa  162  5.0000000000000005e-39  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  33 
 
 
310 aa  162  5.0000000000000005e-39  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
309 aa  162  6e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
294 aa  162  1e-38  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
309 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
316 aa  161  1e-38  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3898  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
324 aa  161  2e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1015  binding-protein-dependent transport systems inner membrane component  35.4 
 
 
292 aa  160  3e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
318 aa  159  4e-38  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_013530  Xcel_2535  binding-protein-dependent transport systems inner membrane component  37.15 
 
 
314 aa  157  3e-37  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
307 aa  157  3e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_011886  Achl_0498  binding-protein-dependent transport systems inner membrane component  35.31 
 
 
317 aa  156  4e-37  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000449996 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
307 aa  155  8e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  32.87 
 
 
307 aa  155  8e-37  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011886  Achl_3074  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
314 aa  154  1e-36  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011988  Avi_5581  ABC transporter membrane spanning protein (galacturonic acid)  37.04 
 
 
314 aa  153  2.9999999999999998e-36  Agrobacterium vitis S4  Bacteria  normal  0.512211  n/a   
 
 
-
 
NC_009636  Smed_3328  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
318 aa  153  4e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.670475  normal  0.953703 
 
 
-
 
NC_012669  Bcav_2978  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
289 aa  152  5.9999999999999996e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  34.28 
 
 
292 aa  152  8e-36  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  35.66 
 
 
300 aa  152  8e-36  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4197  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
326 aa  152  8.999999999999999e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.979447  normal 
 
 
-
 
NC_012669  Bcav_3676  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
309 aa  152  8.999999999999999e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7905  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
336 aa  151  1e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2587  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
314 aa  151  1e-35  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.000137508  normal 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
314 aa  152  1e-35  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  35.82 
 
 
321 aa  151  1e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  32.19 
 
 
296 aa  151  1e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_013526  Tter_2453  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
314 aa  152  1e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000200699  n/a   
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
311 aa  150  3e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
305 aa  149  5e-35  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4872  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
310 aa  149  5e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.181942  normal  0.51159 
 
 
-
 
NC_009767  Rcas_3564  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
316 aa  149  5e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.264329 
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
316 aa  149  6e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  33.76 
 
 
321 aa  149  7e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
296 aa  148  1.0000000000000001e-34  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
314 aa  148  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_012669  Bcav_0146  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
292 aa  148  1.0000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0896196  normal 
 
 
-
 
NC_013205  Aaci_0796  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
312 aa  148  1.0000000000000001e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.633875  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
313 aa  147  2.0000000000000003e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  31.14 
 
 
288 aa  147  2.0000000000000003e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_008578  Acel_1361  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
315 aa  147  3e-34  Acidothermus cellulolyticus 11B  Bacteria  normal  0.193472  normal  0.165724 
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
318 aa  147  3e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
308 aa  147  3e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  31.62 
 
 
305 aa  147  3e-34  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  35.79 
 
 
330 aa  147  3e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
307 aa  146  4.0000000000000006e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
322 aa  146  4.0000000000000006e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
283 aa  146  4.0000000000000006e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
291 aa  146  5e-34  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_014213  Mesil_3393  binding-protein-dependent transport systems inner membrane component  34.1 
 
 
291 aa  145  7.0000000000000006e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  0.199241  normal  0.935882 
 
 
-
 
NC_013172  Bfae_28370  carbohydrate ABC transporter membrane protein  32.34 
 
 
287 aa  145  8.000000000000001e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  0.096742  n/a   
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
315 aa  145  9e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
294 aa  145  1e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_012669  Bcav_0828  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
316 aa  144  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.194369 
 
 
-
 
NC_013595  Sros_9092  trehalose/maltose transport inner membrane protein  30.94 
 
 
326 aa  144  2e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.309735  normal 
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  35.07 
 
 
293 aa  144  3e-33  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
313 aa  143  3e-33  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  28.93 
 
 
319 aa  143  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_4016  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
319 aa  143  4e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0311  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
321 aa  143  5e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_27710  permease component of ABC-type sugar transporter  32.32 
 
 
294 aa  142  5e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
312 aa  142  5e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_3596  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
325 aa  142  5e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.295531  normal 
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
310 aa  142  7e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_013526  Tter_2506  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
306 aa  142  7e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000185658  n/a   
 
 
-
 
NC_013172  Bfae_05100  permease component of ABC-type sugar transporter  31.92 
 
 
316 aa  142  7e-33  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
299 aa  142  8e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  31.56 
 
 
311 aa  142  8e-33  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
318 aa  142  9e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
317 aa  141  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
309 aa  141  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_008578  Acel_0553  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
339 aa  142  9.999999999999999e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
309 aa  142  9.999999999999999e-33  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
317 aa  141  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0295  binding-protein-dependent transport systems inner membrane component  33.11 
 
 
306 aa  142  9.999999999999999e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
305 aa  141  9.999999999999999e-33  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
316 aa  141  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_013521  Sked_06580  carbohydrate ABC transporter membrane protein  33.12 
 
 
318 aa  141  9.999999999999999e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  32.71 
 
 
292 aa  140  1.9999999999999998e-32  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  29.51 
 
 
293 aa  141  1.9999999999999998e-32  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  32.12 
 
 
306 aa  140  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
427 aa  140  3e-32  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_013595  Sros_4987  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
292 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.753078  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  31.15 
 
 
317 aa  140  3e-32  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
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