149 homologs were found in PanDaTox collection
for query gene Dfer_3750 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_3750  putative transcriptional regulator, Crp/Fnr family  100 
 
 
201 aa  410  1e-114  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.44373  normal 
 
 
-
 
NC_013037  Dfer_0889  putative transcriptional regulator, Crp/Fnr family  51.6 
 
 
217 aa  209  1e-53  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00205469  normal  0.913069 
 
 
-
 
NC_013037  Dfer_2871  putative transcriptional regulator, Crp/Fnr family  31.03 
 
 
193 aa  91.7  8e-18  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00453056  normal  0.032413 
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  26.98 
 
 
189 aa  84.7  7e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  27.15 
 
 
187 aa  81.6  0.000000000000008  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  27.87 
 
 
191 aa  81.3  0.000000000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  28.57 
 
 
193 aa  79  0.00000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_013061  Phep_4254  cyclic nucleotide-binding  32.08 
 
 
189 aa  79  0.00000000000005  Pedobacter heparinus DSM 2366  Bacteria  normal  0.908363  normal 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  30.19 
 
 
201 aa  77  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  28.75 
 
 
185 aa  75.9  0.0000000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  29.14 
 
 
191 aa  75.5  0.0000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  28.3 
 
 
186 aa  73.6  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  26.29 
 
 
190 aa  72.8  0.000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6712  putative transcriptional regulator, Crp/Fnr family  27.88 
 
 
194 aa  72.8  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  30.63 
 
 
194 aa  72.4  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_013162  Coch_1592  cyclic nucleotide-binding protein  27.16 
 
 
192 aa  70.1  0.00000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.619308  n/a   
 
 
-
 
NC_013730  Slin_2881  putative transcriptional regulator, Crp/Fnr family  27.5 
 
 
187 aa  70.5  0.00000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  25.71 
 
 
190 aa  70.1  0.00000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  28.57 
 
 
196 aa  70.1  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  26.42 
 
 
189 aa  68.9  0.00000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_008255  CHU_2257  cyclic nucleotide binding regulatory protein  25.79 
 
 
190 aa  68.2  0.00000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0921421  normal 
 
 
-
 
NC_009441  Fjoh_3193  cyclic nucleotide-binding protein  28.39 
 
 
192 aa  67.8  0.0000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  26.88 
 
 
204 aa  67.4  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  29.24 
 
 
208 aa  66.2  0.0000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  29.61 
 
 
198 aa  66.2  0.0000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  27.65 
 
 
199 aa  66.6  0.0000000003  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1779  cyclic nucleotide-binding  28.32 
 
 
192 aa  65.1  0.0000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.705859  normal  0.0224927 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  28.98 
 
 
189 aa  64.7  0.0000000008  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  27.1 
 
 
196 aa  64.3  0.000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_009441  Fjoh_3294  cyclic nucleotide-binding protein  30.52 
 
 
187 aa  63.9  0.000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  25.32 
 
 
188 aa  63.5  0.000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0302  putative transcriptional regulator, Crp/Fnr family  30.97 
 
 
189 aa  63.5  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3827  cyclic nucleotide-binding protein  29.27 
 
 
188 aa  63.2  0.000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  26.9 
 
 
194 aa  62.4  0.000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_001710  cAMP-binding protein  30 
 
 
192 aa  61.6  0.000000008  Vibrio sp. Ex25  Bacteria  normal  0.689486  n/a   
 
 
-
 
NC_013730  Slin_2093  putative transcriptional regulator, Crp/Fnr family  26.7 
 
 
198 aa  61.6  0.000000008  Spirosoma linguale DSM 74  Bacteria  normal  0.177732  normal  0.144661 
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  28.19 
 
 
194 aa  61.6  0.000000008  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  28.93 
 
 
192 aa  61.2  0.000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  27.04 
 
 
198 aa  61.2  0.00000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  28.67 
 
 
187 aa  60.8  0.00000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_008255  CHU_0678  cyclic nucleotide binding-regulatory protein  27.91 
 
 
193 aa  60.5  0.00000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  27.15 
 
 
191 aa  60.8  0.00000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013037  Dfer_1119  putative transcriptional regulator, Crp/Fnr family  27.56 
 
 
200 aa  61.2  0.00000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.301792  normal  0.283785 
 
 
-
 
NC_011725  BCB4264_A1286  cyclic nucleotide binding regulatory protein  27.27 
 
 
190 aa  60.1  0.00000002  Bacillus cereus B4264  Bacteria  normal  0.0475736  n/a   
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  27.54 
 
 
168 aa  59.7  0.00000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_013061  Phep_2769  cyclic nucleotide-binding  26.44 
 
 
192 aa  59.7  0.00000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.311339  normal 
 
 
-
 
NC_008048  Sala_3164  cyclic nucleotide-binding protein  22.98 
 
 
199 aa  59.3  0.00000004  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  28.77 
 
 
194 aa  58.9  0.00000004  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  27.22 
 
 
175 aa  59.3  0.00000004  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  21.76 
 
 
189 aa  59.3  0.00000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1635  putative transcriptional regulator, Crp/Fnr family  24.18 
 
 
193 aa  58.2  0.00000008  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3763  cyclic nucleotide binding regulatory protein  25.66 
 
 
208 aa  57.4  0.0000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.540602  normal 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  24.03 
 
 
196 aa  57.8  0.0000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  24.84 
 
 
189 aa  56.6  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  28.95 
 
 
197 aa  56.6  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_013132  Cpin_4692  putative transcriptional regulator, Crp/Fnr family  24.73 
 
 
199 aa  57  0.0000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.177922  hitchhiker  0.00287495 
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  25.5 
 
 
191 aa  56.2  0.0000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  26.45 
 
 
195 aa  56.6  0.0000003  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  26.22 
 
 
192 aa  56.2  0.0000003  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  23.56 
 
 
196 aa  56.2  0.0000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  25.29 
 
 
194 aa  55.8  0.0000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  26.54 
 
 
208 aa  55.8  0.0000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013162  Coch_0935  cyclic nucleotide-binding protein  23.64 
 
 
166 aa  55.5  0.0000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0225021  n/a   
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  23.08 
 
 
201 aa  55.5  0.0000005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_013730  Slin_2747  putative transcriptional regulator, Crp/Fnr family  24.84 
 
 
187 aa  55.5  0.0000006  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.000105998 
 
 
-
 
NC_008255  CHU_1677  cyclic nucleotide binding regulatory protein  23.18 
 
 
175 aa  55.1  0.0000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.24852  normal 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  24.52 
 
 
191 aa  55.1  0.0000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_008255  CHU_1123  cyclic nucleotide binding regulatory protein  24.42 
 
 
185 aa  54.7  0.0000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.223037  normal 
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  26.32 
 
 
189 aa  54.3  0.000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  27.1 
 
 
189 aa  54.3  0.000001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  22.05 
 
 
213 aa  53.9  0.000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_009457  VC0395_A2140  hypothetical protein  27.81 
 
 
189 aa  54.3  0.000001  Vibrio cholerae O395  Bacteria  normal  0.340866  n/a   
 
 
-
 
NC_013132  Cpin_0260  putative transcriptional regulator, Crp/Fnr family  24.32 
 
 
216 aa  53.5  0.000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0259  putative transcriptional regulator, Crp/Fnr family  24.82 
 
 
179 aa  53.1  0.000003  Spirosoma linguale DSM 74  Bacteria  normal  0.0493403  normal  0.0138145 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  23.42 
 
 
192 aa  52.8  0.000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_013132  Cpin_2895  putative transcriptional regulator, Crp/Fnr family  25 
 
 
194 aa  52.4  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  29.52 
 
 
200 aa  52.8  0.000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6187  putative transcriptional regulator, Crp/Fnr family  26.32 
 
 
191 aa  52  0.000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.138548 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  24.35 
 
 
208 aa  51.6  0.000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00763  hypothetical protein  27.85 
 
 
190 aa  51.6  0.000008  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_0484  putative transcriptional regulator, Crp/Fnr family  21.67 
 
 
189 aa  51.6  0.000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.46296  normal 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  25 
 
 
197 aa  51.2  0.000009  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  25.15 
 
 
222 aa  50.8  0.00001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  24.84 
 
 
194 aa  51.2  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  28.72 
 
 
239 aa  50.8  0.00001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  24.36 
 
 
227 aa  51.2  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  25.15 
 
 
630 aa  50.1  0.00002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  25.15 
 
 
251 aa  50.1  0.00002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  24.68 
 
 
205 aa  50.4  0.00002  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  24.56 
 
 
248 aa  50.1  0.00002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  26.06 
 
 
202 aa  50.1  0.00002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  24.56 
 
 
248 aa  50.1  0.00002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  25.15 
 
 
251 aa  50.1  0.00002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  25.15 
 
 
251 aa  50.1  0.00002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  24.56 
 
 
248 aa  50.1  0.00002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  22.84 
 
 
194 aa  50.4  0.00002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_013132  Cpin_1379  putative transcriptional regulator, Crp/Fnr family  25.32 
 
 
187 aa  50.4  0.00002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  25.97 
 
 
195 aa  49.3  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  24.56 
 
 
248 aa  49.7  0.00003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  24.56 
 
 
249 aa  49.7  0.00003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
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