More than 300 homologs were found in PanDaTox collection
for query gene Smed_4204 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6113  4-hydroxyphenylpyruvate dioxygenase  55.61 
 
 
623 aa  656    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.471766 
 
 
-
 
NC_009668  Oant_4428  4-hydroxyphenylpyruvate dioxygenase  67.56 
 
 
633 aa  838    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5449  4-hydroxyphenylpyruvate dioxygenase  62.46 
 
 
615 aa  774    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4204  xylose isomerase domain-containing protein  100 
 
 
629 aa  1269    Sinorhizobium medicae WSM419  Bacteria  normal  0.460434  normal 
 
 
-
 
NC_007794  Saro_1586  4-hydroxyphenylpyruvate dioxygenase  54.75 
 
 
621 aa  647    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.435654  n/a   
 
 
-
 
NC_011366  Rleg2_5952  4-hydroxyphenylpyruvate dioxygenase  65.77 
 
 
631 aa  823    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0955687  decreased coverage  0.00791612 
 
 
-
 
NC_010511  M446_4755  4-hydroxyphenylpyruvate dioxygenase  55 
 
 
637 aa  676    Methylobacterium sp. 4-46  Bacteria  normal  0.304127  normal 
 
 
-
 
NC_008254  Meso_0782  4-hydroxyphenylpyruvate dioxygenase  68.83 
 
 
630 aa  862    Chelativorans sp. BNC1  Bacteria  normal  0.817905  n/a   
 
 
-
 
NC_011894  Mnod_0122  Xylose isomerase domain protein TIM barrel  55.15 
 
 
627 aa  684    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.134725  n/a   
 
 
-
 
NC_012858  Rleg_7092  4-hydroxyphenylpyruvate dioxygenase  64.83 
 
 
631 aa  820    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.26168  normal 
 
 
-
 
NC_013946  Mrub_0606  4-hydroxyphenylpyruvate dioxygenase  48.96 
 
 
624 aa  612  9.999999999999999e-175  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0633938 
 
 
-
 
NC_007963  Csal_0292  4-hydroxyphenylpyruvate dioxygenase  48.46 
 
 
615 aa  577  1.0000000000000001e-163  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3320  4-hydroxyphenylpyruvate dioxygenase  45.98 
 
 
630 aa  545  1e-154  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2346  4-hydroxyphenylpyruvate dioxygenase, putative  46.99 
 
 
635 aa  540  9.999999999999999e-153  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5035  4-hydroxyphenylpyruvate dioxygenase  47.44 
 
 
632 aa  541  9.999999999999999e-153  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2225  4-hydroxyphenylpyruvate dioxygenase  46.91 
 
 
635 aa  535  1e-151  Pseudomonas putida W619  Bacteria  normal  0.44574  normal 
 
 
-
 
NC_010678  Rpic_4305  4-hydroxyphenylpyruvate dioxygenase  46.95 
 
 
628 aa  535  1e-151  Ralstonia pickettii 12J  Bacteria  normal  0.92924  normal 
 
 
-
 
NC_007492  Pfl01_4905  4-hydroxyphenylpyruvate dioxygenase  46.66 
 
 
633 aa  535  1e-151  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4415  4-hydroxyphenylpyruvate dioxygenase  46.95 
 
 
628 aa  535  1e-151  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2130  4-hydroxyphenylpyruvate dioxygenase  46.52 
 
 
635 aa  533  1e-150  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0402618  normal  0.678263 
 
 
-
 
NC_009656  PSPA7_0327  hypothetical protein  47.78 
 
 
634 aa  526  1e-148  Pseudomonas aeruginosa PA7  Bacteria  normal  0.627098  n/a   
 
 
-
 
NC_002947  PP_2554  4-hydroxyphenylpyruvate dioxygenase  47.07 
 
 
635 aa  522  1e-147  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.00914053 
 
 
-
 
NC_009512  Pput_3161  4-hydroxyphenylpyruvate dioxygenase  47.07 
 
 
635 aa  522  1e-147  Pseudomonas putida F1  Bacteria  normal  0.706766  normal 
 
 
-
 
NC_008463  PA14_03000  hypothetical protein  47.78 
 
 
634 aa  523  1e-147  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00135939 
 
 
-
 
NC_003296  RS02058  hypothetical protein  48.7 
 
 
626 aa  518  1e-146  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0224521  normal  0.842888 
 
 
-
 
NC_010322  PputGB1_3362  4-hydroxyphenylpyruvate dioxygenase  46.59 
 
 
635 aa  520  1e-146  Pseudomonas putida GB-1  Bacteria  normal  0.283519  normal  0.789434 
 
 
-
 
NC_012560  Avin_38100  4-hydroxyphenylpyruvate dioxygenase  47.25 
 
 
632 aa  509  1e-143  Azotobacter vinelandii DJ  Bacteria  normal  0.749235  n/a   
 
 
-
 
NC_010622  Bphy_1081  4-hydroxyphenylpyruvate dioxygenase  44.52 
 
 
628 aa  495  1e-139  Burkholderia phymatum STM815  Bacteria  normal  0.796659  normal  0.416218 
 
 
-
 
NC_010676  Bphyt_4567  Xylose isomerase domain protein TIM barrel  45.23 
 
 
627 aa  490  1e-137  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0882  4-hydroxyphenylpyruvate dioxygenase  45.13 
 
 
627 aa  482  1e-134  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.923988 
 
 
-
 
NC_010524  Lcho_0418  xylose isomerase domain-containing protein  42.86 
 
 
635 aa  481  1e-134  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_1560  4-hydroxyphenylpyruvate dioxygenase  42.5 
 
 
632 aa  479  1e-134  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.288895  normal 
 
 
-
 
NC_007511  Bcep18194_B0343  4-hydroxyphenylpyruvate dioxygenase  42.95 
 
 
630 aa  472  1e-132  Burkholderia sp. 383  Bacteria  normal  normal  0.880013 
 
 
-
 
NC_010552  BamMC406_5194  4-hydroxyphenylpyruvate dioxygenase  42.95 
 
 
630 aa  472  1.0000000000000001e-131  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4496  4-hydroxyphenylpyruvate dioxygenase  40.85 
 
 
638 aa  469  1.0000000000000001e-131  Polaromonas sp. JS666  Bacteria  normal  normal  0.460677 
 
 
-
 
NC_008391  Bamb_4666  4-hydroxyphenylpyruvate dioxygenase  43.04 
 
 
630 aa  463  1e-129  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.735725 
 
 
-
 
NC_009654  Mmwyl1_3913  xylose isomerase domain-containing protein  40.96 
 
 
617 aa  464  1e-129  Marinomonas sp. MWYL1  Bacteria  normal  0.974395  normal 
 
 
-
 
NC_010086  Bmul_3418  4-hydroxyphenylpyruvate dioxygenase  42.72 
 
 
630 aa  459  9.999999999999999e-129  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0242311  normal  0.14685 
 
 
-
 
NC_010515  Bcenmc03_4963  4-hydroxyphenylpyruvate dioxygenase  43.04 
 
 
630 aa  458  1e-127  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0115166 
 
 
-
 
NC_008061  Bcen_3062  4-hydroxyphenylpyruvate dioxygenase  43.04 
 
 
630 aa  458  1e-127  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5305  4-hydroxyphenylpyruvate dioxygenase  43.04 
 
 
630 aa  458  1e-127  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.114512 
 
 
-
 
NC_013947  Snas_5095  Xylose isomerase domain-containing protein TIM barrel  40.1 
 
 
604 aa  422  1e-117  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0443788 
 
 
-
 
NC_007650  BTH_II2059  4-hydroxyphenylpyruvate dioxygenase, putative  40.24 
 
 
687 aa  419  9.999999999999999e-116  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3855  Xylose isomerase domain protein TIM barrel  38.7 
 
 
624 aa  398  1e-109  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_4079  xylose isomerase domain-containing protein  38.89 
 
 
629 aa  395  1e-108  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2375  xylose isomerase-like TIM barrel  46.17 
 
 
477 aa  388  1e-106  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4090  Xylose isomerase domain protein TIM barrel  39.22 
 
 
645 aa  382  1e-105  Nakamurella multipartita DSM 44233  Bacteria  normal  hitchhiker  0.00816269 
 
 
-
 
NC_009664  Krad_1477  Xylose isomerase domain protein TIM barrel  40.84 
 
 
596 aa  369  1e-100  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0230944  normal  0.313669 
 
 
-
 
NC_009075  BURPS668_A0577  4-hydroxyphenylpyruvate dioxygenase  52.79 
 
 
687 aa  269  1e-70  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0848  putative 4-hydroxyphenylpyruvate dioxygenase  52.79 
 
 
684 aa  268  2e-70  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_2205  putative 4-hydroxyphenylpyruvate dioxygenase  52.79 
 
 
684 aa  268  2e-70  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1752  putative 4-hydroxyphenylpyruvate dioxygenase  52.79 
 
 
684 aa  268  2e-70  Burkholderia mallei SAVP1  Bacteria  normal  0.10433  n/a   
 
 
-
 
NC_009079  BMA10247_A0891  AP endonuclease  52.79 
 
 
684 aa  268  2e-70  Burkholderia mallei NCTC 10247  Bacteria  normal  0.940921  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0481  AP endonuclease  52.79 
 
 
684 aa  268  2.9999999999999995e-70  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1894  putative amino acid dioxygenase  52.79 
 
 
684 aa  268  2.9999999999999995e-70  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1437  4-hydroxyphenylpyruvate dioxygenase  33.54 
 
 
351 aa  176  9.999999999999999e-43  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3692  xylose isomerase domain-containing protein  36.63 
 
 
305 aa  166  1.0000000000000001e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_1656  xylose isomerase domain-containing protein  37.72 
 
 
297 aa  162  1e-38  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.876977 
 
 
-
 
NC_007948  Bpro_1854  xylose isomerase-like TIM barrel  36.33 
 
 
297 aa  160  8e-38  Polaromonas sp. JS666  Bacteria  normal  0.151277  normal  0.216619 
 
 
-
 
NC_008463  PA14_53070  4-hydroxyphenylpyruvate dioxygenase  32.32 
 
 
357 aa  159  1e-37  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4442  xylose isomerase domain-containing protein  36.65 
 
 
298 aa  158  2e-37  Delftia acidovorans SPH-1  Bacteria  normal  0.481875  normal  0.31172 
 
 
-
 
NC_006348  BMA2582  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3528  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3784  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia pseudomallei 668  Bacteria  normal  0.205691  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3120  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia mallei SAVP1  Bacteria  normal  0.379899  n/a   
 
 
-
 
NC_007434  BURPS1710b_0016  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3845  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1975  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  0.673327  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0003  4-hydroxyphenylpyruvate dioxygenase  34.02 
 
 
365 aa  155  2e-36  Burkholderia mallei SAVP1  Bacteria  normal  0.809  n/a   
 
 
-
 
NC_007651  BTH_I3106  4-hydroxyphenylpyruvate dioxygenase  33.73 
 
 
365 aa  154  4e-36  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4191  4-hydroxyphenylpyruvate dioxygenase  30.85 
 
 
378 aa  154  4e-36  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0301  4-hydroxyphenylpyruvate dioxygenase  32.25 
 
 
365 aa  152  2e-35  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.000140026 
 
 
-
 
NC_008060  Bcen_2785  4-hydroxyphenylpyruvate dioxygenase  32.25 
 
 
365 aa  152  2e-35  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0321  4-hydroxyphenylpyruvate dioxygenase  32.25 
 
 
365 aa  152  2e-35  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2137  4-hydroxyphenylpyruvate dioxygenase  31.99 
 
 
377 aa  151  3e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.658248 
 
 
-
 
NC_009439  Pmen_1696  4-hydroxyphenylpyruvate dioxygenase  31.71 
 
 
360 aa  151  4e-35  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.141185 
 
 
-
 
NC_007951  Bxe_A0286  4-hydroxyphenylpyruvate dioxygenase  31.66 
 
 
365 aa  150  6e-35  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.408126 
 
 
-
 
NC_010084  Bmul_0223  4-hydroxyphenylpyruvate dioxygenase  31.95 
 
 
365 aa  150  6e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.376735  hitchhiker  0.0000014808 
 
 
-
 
NC_008390  Bamb_0240  4-hydroxyphenylpyruvate dioxygenase  32.25 
 
 
365 aa  150  8e-35  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0960  4-hydroxyphenylpyruvate dioxygenase  31.21 
 
 
369 aa  149  1.0000000000000001e-34  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl2204  4-hydroxyphenylpyruvate dioxygenase (legiolysin)  30.06 
 
 
348 aa  149  1.0000000000000001e-34  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003655  4-hydroxyphenylpyruvate dioxygenase  32.63 
 
 
357 aa  149  1.0000000000000001e-34  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2232  4-hydroxyphenylpyruvate dioxygenase (legiolysin)  30.06 
 
 
348 aa  149  2.0000000000000003e-34  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_02177  4-hydroxyphenylpyruvate dioxygenase  32.02 
 
 
357 aa  149  2.0000000000000003e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010551  BamMC406_0248  4-hydroxyphenylpyruvate dioxygenase  32.25 
 
 
365 aa  149  2.0000000000000003e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.000564922 
 
 
-
 
NC_010622  Bphy_2866  4-hydroxyphenylpyruvate dioxygenase  31.36 
 
 
365 aa  148  3e-34  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0000187167 
 
 
-
 
NC_007510  Bcep18194_A3420  4-hydroxyphenylpyruvate dioxygenase  31.56 
 
 
365 aa  148  4.0000000000000006e-34  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc3103  4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein  31.27 
 
 
367 aa  145  2e-33  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4652  4-hydroxyphenylpyruvate dioxygenase  32.62 
 
 
357 aa  145  2e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3671  4-hydroxyphenylpyruvate dioxygenase  30.77 
 
 
365 aa  145  2e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0292973  hitchhiker  0.0000000943483 
 
 
-
 
NC_008825  Mpe_A0346  4-hydroxyphenylpyruvate dioxygenase  31.16 
 
 
370 aa  145  3e-33  Methylibium petroleiphilum PM1  Bacteria  normal  0.152583  normal 
 
 
-
 
NC_012791  Vapar_4766  4-hydroxyphenylpyruvate dioxygenase  30.55 
 
 
375 aa  144  4e-33  Variovorax paradoxus S110  Bacteria  normal  0.578295  n/a   
 
 
-
 
NC_012912  Dd1591_4234  4-hydroxyphenylpyruvate dioxygenase  31.49 
 
 
362 aa  144  5e-33  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2917  4-hydroxyphenylpyruvate dioxygenase  31.55 
 
 
358 aa  144  7e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.433802  normal  0.723827 
 
 
-
 
NC_007948  Bpro_4213  4-hydroxyphenylpyruvate dioxygenase  30.61 
 
 
376 aa  142  1.9999999999999998e-32  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2773  4-hydroxyphenylpyruvate dioxygenase  33.53 
 
 
377 aa  141  3.9999999999999997e-32  Burkholderia xenovorans LB400  Bacteria  normal  0.0648229  normal 
 
 
-
 
NC_010676  Bphyt_6758  4-hydroxyphenylpyruvate dioxygenase  32.66 
 
 
377 aa  140  6e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.39131 
 
 
-
 
NC_010002  Daci_4795  4-hydroxyphenylpyruvate dioxygenase  29.89 
 
 
364 aa  139  1e-31  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.00190969  normal  0.642599 
 
 
-
 
NC_009511  Swit_3865  4-hydroxyphenylpyruvate dioxygenase  31 
 
 
367 aa  139  2e-31  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3388  4-hydroxyphenylpyruvate dioxygenase  30.38 
 
 
368 aa  139  2e-31  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
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