290 homologs were found in PanDaTox collection
for query gene Rpic12D_4415 on replicon NC_012857
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003296  RS02058  hypothetical protein  65.61 
 
 
626 aa  769    Ralstonia solanacearum GMI1000  Bacteria  normal  0.0224521  normal  0.842888 
 
 
-
 
NC_004578  PSPTO_2346  4-hydroxyphenylpyruvate dioxygenase, putative  54.09 
 
 
635 aa  649    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2130  4-hydroxyphenylpyruvate dioxygenase  54.74 
 
 
635 aa  655    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0402618  normal  0.678263 
 
 
-
 
NC_007348  Reut_B5035  4-hydroxyphenylpyruvate dioxygenase  77.74 
 
 
632 aa  959    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4905  4-hydroxyphenylpyruvate dioxygenase  54.23 
 
 
633 aa  640    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4415  4-hydroxyphenylpyruvate dioxygenase  100 
 
 
628 aa  1272    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0292  4-hydroxyphenylpyruvate dioxygenase  53.33 
 
 
615 aa  642    Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_38100  4-hydroxyphenylpyruvate dioxygenase  55.95 
 
 
632 aa  636    Azotobacter vinelandii DJ  Bacteria  normal  0.749235  n/a   
 
 
-
 
NC_010678  Rpic_4305  4-hydroxyphenylpyruvate dioxygenase  100 
 
 
628 aa  1272    Ralstonia pickettii 12J  Bacteria  normal  0.92924  normal 
 
 
-
 
NC_010501  PputW619_2225  4-hydroxyphenylpyruvate dioxygenase  53.77 
 
 
635 aa  643    Pseudomonas putida W619  Bacteria  normal  0.44574  normal 
 
 
-
 
NC_010322  PputGB1_3362  4-hydroxyphenylpyruvate dioxygenase  55.06 
 
 
635 aa  634  1e-180  Pseudomonas putida GB-1  Bacteria  normal  0.283519  normal  0.789434 
 
 
-
 
NC_002947  PP_2554  4-hydroxyphenylpyruvate dioxygenase  54.74 
 
 
635 aa  631  1e-179  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.00914053 
 
 
-
 
NC_009512  Pput_3161  4-hydroxyphenylpyruvate dioxygenase  54.74 
 
 
635 aa  631  1e-179  Pseudomonas putida F1  Bacteria  normal  0.706766  normal 
 
 
-
 
NC_008463  PA14_03000  hypothetical protein  55.75 
 
 
634 aa  627  1e-178  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00135939 
 
 
-
 
NC_009656  PSPA7_0327  hypothetical protein  55.43 
 
 
634 aa  624  1e-177  Pseudomonas aeruginosa PA7  Bacteria  normal  0.627098  n/a   
 
 
-
 
NC_012791  Vapar_3320  4-hydroxyphenylpyruvate dioxygenase  51.83 
 
 
630 aa  619  1e-176  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4496  4-hydroxyphenylpyruvate dioxygenase  50.86 
 
 
638 aa  603  1.0000000000000001e-171  Polaromonas sp. JS666  Bacteria  normal  normal  0.460677 
 
 
-
 
NC_010622  Bphy_1081  4-hydroxyphenylpyruvate dioxygenase  51.77 
 
 
628 aa  599  1e-170  Burkholderia phymatum STM815  Bacteria  normal  0.796659  normal  0.416218 
 
 
-
 
NC_010524  Lcho_0418  xylose isomerase domain-containing protein  50.4 
 
 
635 aa  586  1e-166  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008781  Pnap_1560  4-hydroxyphenylpyruvate dioxygenase  49.76 
 
 
632 aa  580  1e-164  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.288895  normal 
 
 
-
 
NC_013946  Mrub_0606  4-hydroxyphenylpyruvate dioxygenase  48.54 
 
 
624 aa  572  1.0000000000000001e-162  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0633938 
 
 
-
 
NC_007511  Bcep18194_B0343  4-hydroxyphenylpyruvate dioxygenase  50.56 
 
 
630 aa  572  1.0000000000000001e-162  Burkholderia sp. 383  Bacteria  normal  normal  0.880013 
 
 
-
 
NC_010552  BamMC406_5194  4-hydroxyphenylpyruvate dioxygenase  50.4 
 
 
630 aa  567  1e-160  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2375  xylose isomerase-like TIM barrel  62.82 
 
 
477 aa  566  1e-160  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6113  4-hydroxyphenylpyruvate dioxygenase  49.84 
 
 
623 aa  564  1.0000000000000001e-159  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.471766 
 
 
-
 
NC_011894  Mnod_0122  Xylose isomerase domain protein TIM barrel  47.32 
 
 
627 aa  561  1.0000000000000001e-159  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.134725  n/a   
 
 
-
 
NC_010511  M446_4755  4-hydroxyphenylpyruvate dioxygenase  47.68 
 
 
637 aa  558  1e-158  Methylobacterium sp. 4-46  Bacteria  normal  0.304127  normal 
 
 
-
 
NC_010086  Bmul_3418  4-hydroxyphenylpyruvate dioxygenase  51.2 
 
 
630 aa  561  1e-158  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0242311  normal  0.14685 
 
 
-
 
NC_010676  Bphyt_4567  Xylose isomerase domain protein TIM barrel  50 
 
 
627 aa  556  1e-157  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3062  4-hydroxyphenylpyruvate dioxygenase  50.56 
 
 
630 aa  553  1e-156  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4963  4-hydroxyphenylpyruvate dioxygenase  50.56 
 
 
630 aa  553  1e-156  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0115166 
 
 
-
 
NC_008543  Bcen2424_5305  4-hydroxyphenylpyruvate dioxygenase  50.56 
 
 
630 aa  553  1e-156  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.114512 
 
 
-
 
NC_008391  Bamb_4666  4-hydroxyphenylpyruvate dioxygenase  50.56 
 
 
630 aa  550  1e-155  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.735725 
 
 
-
 
NC_012858  Rleg_7092  4-hydroxyphenylpyruvate dioxygenase  47.18 
 
 
631 aa  549  1e-155  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.26168  normal 
 
 
-
 
NC_011366  Rleg2_5952  4-hydroxyphenylpyruvate dioxygenase  47.88 
 
 
631 aa  545  1e-154  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0955687  decreased coverage  0.00791612 
 
 
-
 
NC_009668  Oant_4428  4-hydroxyphenylpyruvate dioxygenase  47.88 
 
 
633 aa  543  1e-153  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0882  4-hydroxyphenylpyruvate dioxygenase  50.16 
 
 
627 aa  545  1e-153  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.923988 
 
 
-
 
NC_008254  Meso_0782  4-hydroxyphenylpyruvate dioxygenase  47.31 
 
 
630 aa  541  9.999999999999999e-153  Chelativorans sp. BNC1  Bacteria  normal  0.817905  n/a   
 
 
-
 
NC_009620  Smed_4204  xylose isomerase domain-containing protein  46.95 
 
 
629 aa  535  1e-151  Sinorhizobium medicae WSM419  Bacteria  normal  0.460434  normal 
 
 
-
 
NC_009654  Mmwyl1_3913  xylose isomerase domain-containing protein  44.08 
 
 
617 aa  499  1e-140  Marinomonas sp. MWYL1  Bacteria  normal  0.974395  normal 
 
 
-
 
NC_007794  Saro_1586  4-hydroxyphenylpyruvate dioxygenase  46.33 
 
 
621 aa  501  1e-140  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.435654  n/a   
 
 
-
 
NC_011988  Avi_5449  4-hydroxyphenylpyruvate dioxygenase  43.21 
 
 
615 aa  484  1e-135  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5095  Xylose isomerase domain-containing protein TIM barrel  44.72 
 
 
604 aa  462  1e-129  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0443788 
 
 
-
 
NC_008541  Arth_4079  xylose isomerase domain-containing protein  44.23 
 
 
629 aa  455  1e-127  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3855  Xylose isomerase domain protein TIM barrel  43.29 
 
 
624 aa  447  1.0000000000000001e-124  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_4090  Xylose isomerase domain protein TIM barrel  43.61 
 
 
645 aa  436  1e-121  Nakamurella multipartita DSM 44233  Bacteria  normal  hitchhiker  0.00816269 
 
 
-
 
NC_009664  Krad_1477  Xylose isomerase domain protein TIM barrel  42.83 
 
 
596 aa  378  1e-103  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0230944  normal  0.313669 
 
 
-
 
NC_007650  BTH_II2059  4-hydroxyphenylpyruvate dioxygenase, putative  61.6 
 
 
687 aa  323  5e-87  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0848  putative 4-hydroxyphenylpyruvate dioxygenase  60.84 
 
 
684 aa  313  6.999999999999999e-84  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0891  AP endonuclease  60.84 
 
 
684 aa  313  6.999999999999999e-84  Burkholderia mallei NCTC 10247  Bacteria  normal  0.940921  n/a   
 
 
-
 
NC_009075  BURPS668_A0577  4-hydroxyphenylpyruvate dioxygenase  60.84 
 
 
687 aa  313  6.999999999999999e-84  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_2205  putative 4-hydroxyphenylpyruvate dioxygenase  60.84 
 
 
684 aa  313  6.999999999999999e-84  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1752  putative 4-hydroxyphenylpyruvate dioxygenase  60.84 
 
 
684 aa  313  6.999999999999999e-84  Burkholderia mallei SAVP1  Bacteria  normal  0.10433  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0481  AP endonuclease  60.84 
 
 
684 aa  312  1e-83  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1894  putative amino acid dioxygenase  60.84 
 
 
684 aa  312  1e-83  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1437  4-hydroxyphenylpyruvate dioxygenase  36.66 
 
 
351 aa  204  6e-51  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_3865  4-hydroxyphenylpyruvate dioxygenase  35.17 
 
 
367 aa  187  5e-46  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0960  4-hydroxyphenylpyruvate dioxygenase  34.25 
 
 
369 aa  181  2.9999999999999997e-44  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2917  4-hydroxyphenylpyruvate dioxygenase  34.86 
 
 
358 aa  179  1e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.433802  normal  0.723827 
 
 
-
 
NC_008228  Patl_2997  4-hydroxyphenylpyruvate dioxygenase  33.64 
 
 
360 aa  179  2e-43  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.171273  n/a   
 
 
-
 
NC_013456  VEA_003655  4-hydroxyphenylpyruvate dioxygenase  33.23 
 
 
357 aa  177  5e-43  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4501  4-hydroxyphenylpyruvate dioxygenase  34.85 
 
 
359 aa  177  6e-43  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02177  4-hydroxyphenylpyruvate dioxygenase  32.93 
 
 
357 aa  176  9.999999999999999e-43  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_3330  4-hydroxyphenylpyruvate dioxygenase  35.17 
 
 
358 aa  175  1.9999999999999998e-42  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  decreased coverage  0.000135901 
 
 
-
 
NC_008786  Veis_2137  4-hydroxyphenylpyruvate dioxygenase  34.9 
 
 
377 aa  175  1.9999999999999998e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.658248 
 
 
-
 
NC_010524  Lcho_2042  4-hydroxyphenylpyruvate dioxygenase  35.47 
 
 
358 aa  174  2.9999999999999996e-42  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0443757 
 
 
-
 
NC_008781  Pnap_1120  4-hydroxyphenylpyruvate dioxygenase  34.86 
 
 
360 aa  174  5.999999999999999e-42  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2502  4-hydroxyphenylpyruvate dioxygenase  35.78 
 
 
358 aa  172  1e-41  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3433  4-hydroxyphenylpyruvate dioxygenase  35.78 
 
 
358 aa  172  2e-41  Pseudomonas putida KT2440  Bacteria  normal  0.954221  normal  0.970213 
 
 
-
 
NC_004578  PSPTO_3553  4-hydroxyphenylpyruvate dioxygenase  35.17 
 
 
363 aa  172  2e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.225452  n/a   
 
 
-
 
NC_010501  PputW619_2440  4-hydroxyphenylpyruvate dioxygenase  35.78 
 
 
358 aa  172  2e-41  Pseudomonas putida W619  Bacteria  normal  0.807767  normal 
 
 
-
 
NC_009512  Pput_2329  4-hydroxyphenylpyruvate dioxygenase  35.17 
 
 
358 aa  171  3e-41  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4925  4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein  33.94 
 
 
357 aa  171  3e-41  Cupriavidus metallidurans CH34  Bacteria  normal  0.757451  normal  0.0949883 
 
 
-
 
NC_010682  Rpic_3388  4-hydroxyphenylpyruvate dioxygenase  34.52 
 
 
368 aa  170  9e-41  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4191  4-hydroxyphenylpyruvate dioxygenase  33.14 
 
 
378 aa  168  2e-40  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3041  4-hydroxyphenylpyruvate dioxygenase  34.52 
 
 
368 aa  169  2e-40  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_53070  4-hydroxyphenylpyruvate dioxygenase  32.92 
 
 
357 aa  168  2.9999999999999998e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4795  4-hydroxyphenylpyruvate dioxygenase  33.84 
 
 
364 aa  167  5e-40  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.00190969  normal  0.642599 
 
 
-
 
NC_008228  Patl_1125  4-hydroxyphenylpyruvate dioxygenase  32.01 
 
 
358 aa  167  5.9999999999999996e-40  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3103  4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein  33.93 
 
 
367 aa  167  6.9999999999999995e-40  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_34750  4-hydroxyphenylpyruvate dioxygenase  33.54 
 
 
359 aa  166  9e-40  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1040  4-hydroxyphenylpyruvate dioxygenase  34.09 
 
 
372 aa  166  1.0000000000000001e-39  Psychrobacter sp. PRwf-1  Bacteria  normal  0.53626  normal 
 
 
-
 
NC_007951  Bxe_A0286  4-hydroxyphenylpyruvate dioxygenase  32.24 
 
 
365 aa  166  2.0000000000000002e-39  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.408126 
 
 
-
 
NC_010622  Bphy_2866  4-hydroxyphenylpyruvate dioxygenase  33.33 
 
 
365 aa  165  2.0000000000000002e-39  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0000187167 
 
 
-
 
NC_011138  MADE_02541  4-hydroxyphenylpyruvate dioxygenase  30.55 
 
 
357 aa  166  2.0000000000000002e-39  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000129405  n/a   
 
 
-
 
NC_010084  Bmul_0223  4-hydroxyphenylpyruvate dioxygenase  32.54 
 
 
365 aa  165  2.0000000000000002e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.376735  hitchhiker  0.0000014808 
 
 
-
 
NC_007794  Saro_0597  4-hydroxyphenylpyruvate dioxygenase  33.52 
 
 
370 aa  165  3e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4766  4-hydroxyphenylpyruvate dioxygenase  33.14 
 
 
375 aa  165  3e-39  Variovorax paradoxus S110  Bacteria  normal  0.578295  n/a   
 
 
-
 
NC_011992  Dtpsy_0536  4-hydroxyphenylpyruvate dioxygenase  33.13 
 
 
372 aa  164  6e-39  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0520  4-hydroxyphenylpyruvate dioxygenase  33.13 
 
 
372 aa  164  7e-39  Acidovorax sp. JS42  Bacteria  normal  0.365808  normal  0.0158629 
 
 
-
 
NC_010524  Lcho_0434  4-hydroxyphenylpyruvate dioxygenase  33.03 
 
 
358 aa  163  9e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011071  Smal_3739  4-hydroxyphenylpyruvate dioxygenase  30.61 
 
 
356 aa  161  3e-38  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.368699  normal 
 
 
-
 
NC_008825  Mpe_A0346  4-hydroxyphenylpyruvate dioxygenase  33.33 
 
 
370 aa  161  3e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.152583  normal 
 
 
-
 
NC_007651  BTH_I3106  4-hydroxyphenylpyruvate dioxygenase  32.24 
 
 
365 aa  160  4e-38  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1696  4-hydroxyphenylpyruvate dioxygenase  31.69 
 
 
360 aa  161  4e-38  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.141185 
 
 
-
 
NC_010681  Bphyt_3671  4-hydroxyphenylpyruvate dioxygenase  31.64 
 
 
365 aa  160  6e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0292973  hitchhiker  0.0000000943483 
 
 
-
 
NC_006348  BMA2582  4-hydroxyphenylpyruvate dioxygenase  32.54 
 
 
365 aa  160  6e-38  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3845  4-hydroxyphenylpyruvate dioxygenase  32.54 
 
 
365 aa  160  6e-38  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3528  4-hydroxyphenylpyruvate dioxygenase  32.54 
 
 
365 aa  160  6e-38  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3784  4-hydroxyphenylpyruvate dioxygenase  32.54 
 
 
365 aa  160  6e-38  Burkholderia pseudomallei 668  Bacteria  normal  0.205691  n/a   
 
 
-
 
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