| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_4567 |
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| Symbol | |
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| ID | 6278113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 642301 |
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| End bp | 644184 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642615657 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_001888310 |
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| Protein GI | 187919279 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGTT CGATTGCCAC CGTGTCGATC AGCGGAACCC TCGTCGAGAA GCTGACCGCG
ATCCAGGCGG CGGGCTTCGA AGGCGTCGAG ATTTTCGAAA ACGATTTGCT GTATTTCGAC
GGCTCGCCCG CCGACGTGCG GCGCATCGCT GAAGATCTCG GGCTGAAAAT CATGCTGTTT
CAGCCTTTCC GCGATTTCGA CGGTGTCAGC CCGGAGCGTC TCGAGCGCAA TCTCGACCGC
GCGAAGCGCA AGTTCGACGT CATGCATGAA CTGGGCACGG ACCGCATTCT GGTGTGCAGC
AACGTTTCGC CCGACACCAT CGGCGACGAC GCATTGATGA CCGACCAGCT CGGCGCGCTG
GCGCGCGCGG CGGAGGCGGC CGGCGTGATC GCGGGCTATG AAGCGCTCGC GTGGGGCAAG
CACGTCAAGA CCTACCGGCA CGCGTGGAAG CTCGTGAATA CGGTGAATCA CCCGAATCTC
GGGCTCGTGC TCGACAGCTT CCACACGCTG TCGCTGAACG ACACGCCGGA CGCGATCGCC
GACATTCCGG GCGGCCGCAT CGCCTTCGTG CAGATCGCCG ACGCGCCGAA GCTCGCCATG
GACGTGCTCG AATGGAGCCG CCATTACCGC TGCTTCCCCG GCCAGGGCGA TTTCGATCTG
GCCAATTTCA CGGCGCAGGT CGTGAAAACC GGCTACAGCG GGCCGCTTTC GCTGGAAATT
TTCAACGACG GTTTTCGCGC CGCGCCGACC ACCATCACGG CCGCCGATGG TCATCGCTCG
CTCCTGTTTC TCGAGGAGCA GACCCGCGCG CTGCTCGAAA GCACGCAGCA GCCGGTCGGC
GACCTGTATC GCTCGCCTGC GGCGCCCGCG CACGTCGGCT ACCAGTTTCT GGAGTTCGCG
GTCGACCACA GCACGCGGGC GCAACTCGTC GACTGGCTCG GCAAACTGCG CTTTCGCGAG
GCGGGCCGGC ATCGCTCGAA GGAAGTCACG CTGTATCAGC ACGGCGCGGC CTCGATCGTG
CTGAACGCCG AGCCGGATTC GTTCGCTAAC GCGTTCTTCC AGCAGCATGG CTTGTCGCTG
TGCGCGTCGG CGTTTCGCGT GGACGATGCC AATCAGGCGT TCGAACGCGC CGCCGGCTTC
GGCTACGCGC CGTTTTCCGG GCAGATCGGC CCGAACGAGC GCGTGCTGCC CGCCGTGCAG
GCACCGGACA GCAGCCTGAA CTATTTCGTC GACGAAACGC CGGATCAGCC CACCTTGTTC
GAGGCCGATT TCGTCCTCAC CGACATCAAC GGCCCGAGCG AAGTGGGGCC GCTCAGCCGC
ATCGACCATG TGTGCCTGTC GGTGCCGGCG AATTCGCTGG ATACTTGGGT GCTGTTTCTG
CGCACGGCTT TAGGCTTCCA GGCCGAGCCT GGCGTGCTGG TGCCCGATCC GTACGGCCTC
GTGCGCAGCC GCGCGCTGCG CAGTCACGAC GGTTCGGTGC GGATCGTGCT GAATGCCTCC
GTGGACCATC ACACGGCGGT GGCCGAGGCG TTGCATACGT ATCATGGCTC GGGCCTGAAC
CACGTCGCCT TCAGCACCAG TGACATTTTT AGCGCGATTC CCGAGTTCGT CGCCGACGGC
TTGCCGGTCC TGCGCATCCC GCGCAATTAC TACGAGGATC TGGCCGCCCG CTACGCGTTG
CCGGACGGGA CGCTGGAGGC GCTGCGCGCC AATAACATCC TGTACGACCG CGACGAGCGC
GGCGGCGAGT TTTTCCATGC TTACACGGAG CAGCTCGACC AGCGCTTTTT TATGGAGATC
GTCGAGCGGC GCGGCGGTTA TGACGGTTAT GGCGCGGCTA ATGCTGCCGT GCGGCTCGCC
GCGCAGGCGC AGCGGCGCAA GTAG
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| Protein sequence | MQRSIATVSI SGTLVEKLTA IQAAGFEGVE IFENDLLYFD GSPADVRRIA EDLGLKIMLF
QPFRDFDGVS PERLERNLDR AKRKFDVMHE LGTDRILVCS NVSPDTIGDD ALMTDQLGAL
ARAAEAAGVI AGYEALAWGK HVKTYRHAWK LVNTVNHPNL GLVLDSFHTL SLNDTPDAIA
DIPGGRIAFV QIADAPKLAM DVLEWSRHYR CFPGQGDFDL ANFTAQVVKT GYSGPLSLEI
FNDGFRAAPT TITAADGHRS LLFLEEQTRA LLESTQQPVG DLYRSPAAPA HVGYQFLEFA
VDHSTRAQLV DWLGKLRFRE AGRHRSKEVT LYQHGAASIV LNAEPDSFAN AFFQQHGLSL
CASAFRVDDA NQAFERAAGF GYAPFSGQIG PNERVLPAVQ APDSSLNYFV DETPDQPTLF
EADFVLTDIN GPSEVGPLSR IDHVCLSVPA NSLDTWVLFL RTALGFQAEP GVLVPDPYGL
VRSRALRSHD GSVRIVLNAS VDHHTAVAEA LHTYHGSGLN HVAFSTSDIF SAIPEFVADG
LPVLRIPRNY YEDLAARYAL PDGTLEALRA NNILYDRDER GGEFFHAYTE QLDQRFFMEI
VERRGGYDGY GAANAAVRLA AQAQRRK
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