| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4766 |
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| Symbol | |
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| ID | 7971776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5063741 |
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| End bp | 5064868 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795351 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | YP_002946637 |
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| Protein GI | 239817727 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.578295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCACA CCGACGCGCC CCCCTTCACG CCCTGGGAGA ACCCCATGGG AACCGACGGC
TTCGAATTCA TCGAATACGC GGCGCCGGAT CCGGTCGCGA TGGGCAAGGT GTTCGAGCGC
ATGGGCTTCA AGGCCGTGGC GCGGCACCGC CACAAGAACG TGCTGCTGTA CCGCCAGGGC
ACGATCAATT TCATCGTCAA CGCCGAGCCC GACTCCTTCG CGCAGCGCTT TGCGCGCGAA
CACGGCCCGA GCGTCTGCGC CATCGCCTTC CGCGTGCAGG ACGCCAAGCA GGCCTACGAA
CGCGCGATCT CGCTCGGCGC ATGGGGCTTT GCCGACAAGG CGGGTCCGGG CGAATTGAAC
ATTCCCGCCA TCAAGGGCAT CGGCGACAGC CTGATCTACC TGGTCGACCG CTGGCCCGGC
AAGAACGGCG CGAAGCCGGG CGACATCGGC AACATCGGCT TCTACGACGT CGACTTCGAA
CCGCTGCCGG GCGTGGCCTC GCAGGATGCG CTGGCGCCCA AGGGCAACGG CCTGACCTAC
ATCGACCATC TCACGCACAA TGTGTACCGC GGCCGCATGA ACGTCTGGGC CGGCTTCTAC
GAGAAGCTCT TCAACTTCCG CGAGATCAAG TACTTCGACA TCGAAGGCCA GGTCACGGGC
GTGAAGAGCA AGGCCATGAC CAGCCCCTGC GGCAAGATCC GCATCCCCAT CAATGAAGAG
GGCAAGGAGC AGGCCGGCCA GATCCAGGAG TACCTGGACA TGTACCGCGG CGAAGGCATC
CAGCACATCG CGATGGGCTC GGACAACCTG TACGAGACCG TCGACGCGCT GCGCGCCAAC
GGCGTCACCC TGCTCGACAC CATCGACACC TACTACGAGC TGGTCGACAA GCGCATTCCC
GGCCATGGCG AAAGCGTGGC CGAGCTGCAG AAGCGCAAGA TCCTGATCGA CGGCAAGAAG
GACGCGCTGC TGCTGCAGAT CTTCAGCGAG AACCAGCTCG GCCCGATCTT CTTCGAGTTC
ATCCAGCGCA AGGGCGACGA CGGTTTCGGC AACGGCAACT TCAAGGCGCT GTTCGAAAGC
ATCGAGCTCG ACCAGATGCG CCGCGGCGTG CTGTCGGCCG CAAAATAA
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| Protein sequence | MSHTDAPPFT PWENPMGTDG FEFIEYAAPD PVAMGKVFER MGFKAVARHR HKNVLLYRQG
TINFIVNAEP DSFAQRFARE HGPSVCAIAF RVQDAKQAYE RAISLGAWGF ADKAGPGELN
IPAIKGIGDS LIYLVDRWPG KNGAKPGDIG NIGFYDVDFE PLPGVASQDA LAPKGNGLTY
IDHLTHNVYR GRMNVWAGFY EKLFNFREIK YFDIEGQVTG VKSKAMTSPC GKIRIPINEE
GKEQAGQIQE YLDMYRGEGI QHIAMGSDNL YETVDALRAN GVTLLDTIDT YYELVDKRIP
GHGESVAELQ KRKILIDGKK DALLLQIFSE NQLGPIFFEF IQRKGDDGFG NGNFKALFES
IELDQMRRGV LSAAK
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