Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0418 |
Symbol | |
ID | 6163655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 459189 |
End bp | 461096 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641663167 |
Product | xylose isomerase domain-containing protein |
Protein accession | YP_001789458 |
Protein GI | 171057109 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism [R] General function prediction only |
COG ID | [COG1082] Sugar phosphate isomerases/epimerases [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCGTT CGATCGCCAC CGTTTCGCTC TCCGGCATGT TGAAGGAGAA GCTGCAGGCC GCGGCCGCGG CGCATTTCGA CGGGGTCGAG ATCTTCGAGA ACGACCTGCT GCAGTTTTCG GGCACGCCAC GTGACGTGCG CCGGATCTGC GAGGACCTGG GTCTGGCGAT CGACATGTTC CAGCCCTTCC GCGATTTCGA TGCGCCCACC CCGGCGCAAC TGGCGCGCAG CCTCGAGCGC GCCGAGCGCA AGTTCGACGT CATGGCCGAG CTGGGCACGC CGCTGATCCT GGTCTGCTCG AACGTGCAGC CCGATGCGAT CGGCGATGTC GATCAGCTCG CCGAGCAGTT CCATCAGCTC GCCGAGCGCG CCGCCAAACG CGGCATGCGC ATCGCCTACG AGGCGCTGGC CTGGGGCAGC CAGGTCAAGC TGTTCTCGCA GGCCTGGGCG GTGGTCGAGC GCGTGAACCA CCCGAACCTG GGCCTGGCGC TCGACAGCTT CCACACCCTG TCGCTGCGCG ACGACCCGGC GCCGATCGCG AAGTTGCCGG GCGACAAGAT CTTCTACATG CAGCTCGCCG ACGCGCCCTG GCTCGCCTGG GGCCCGAGCG ACGTGCTGAC CTACAGCCGC CATTACCGCT GCTTCCCGGG CCAGGGCGAG CTCGACGTCA CCGGCTTCGT GCGCGCCGCG CTCGACGCCG GCTACACCGG GCCGATCTCG CTGGAGATCT TCAACGACGA GTTCCGCTCG GCGCCGGCCC GCGCCAACGC GGTCGACGCG ATGCGCTCGC TGCTGTGGCT GGAAGAACAA GTGCGCCACA CGCCGCCCGC ACCGCAGGCC AGGCCCGTCA CGGTGCCGCT GTTCGACCCG CCGCCCGCGC CGGTGCTGAC CGGCTGGTCG TTCATCGAGT TCGCGGTCGA TCCGGCCACC GCCACGCGGC TGGCCGGGCA GCTCACGAGC CTGGGATTTG CGCGCATCGG CCGGCACCGA TCGAAGGACG TCGACCTGTA CGGCCAGGGC GACGTGCGCA TCGTGCTCAA CCTCGAACAG GATTCGTTCG CCCGCAGCCA CTTCGACGTG CACGGCACCT CGGTCTGCGC GCTGGCACTG GCCACCGTCG ACGCCCAGGC CGCATTGGTG CGGGCCGAGG CGCTGGCCTG CCCGCGTGTC ACCGGCCGCA TCGGCAGCGA CGAGCTGAGC ATCCCGGCGG TGCGCTCGCC CGACGGCAGC CTGCTGTATT TCTGCGATGC CAAGCAAGGC GGCCACTCGT TCGAGGCCGA CTTCATCATC GACGCCGAAG CCCTGCGCAA CACGCCGGCC GGCGTCGGTG CCCGCGTCGA TCACCTGACC CAAGCGCTGC CGGGCGGCCA GGTCGAGCCG TGGGTGCTGT TCTACCGCGC GGTGCTGGGC CTGGCGCCGC AGCGCAACAC GGTGCTGCAC GACCCCTACG GCATCATGCG CAGCCGCGAG ATCGAGTCGG CCGACGGTGC GGTGCGCTGC TCGCTGATGG TCTCGGAGCG CGACAACACG GCGGTGTCGC GCTCGGTGTC ACGCTTCGGC GGTGCCGGCG TGCAGCAGAT CGCGATCGGC GTGGGCGACG CGATCGCCAC CGTCACCGCG CTGCGCCAGC GCGGCGCGCC GCTGCTGCCG GTGCCACACA ACTACTACGA CGACCTGGCC GCCAAGTACG AGCTCGATCC GGCCTTCCTG GCCGCGCTGC GTGCCGCCGG CGTGATGTAC GAGCGCGACG CCAAGGGCGA GTTCCTGCAC GCCTACACCG CGCCGTTCGA GGACCGCTTC GAGTTCGAGT TCGTCGAGCG CCGCGGCGCC TACGACCTCT ACGGCTCGAC CAACGCGCCG GTGCGCCTGG CCGCGCTGGC CGAGTGGCGC GCGTCGCACG GCCGCTGA
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Protein sequence | MRRSIATVSL SGMLKEKLQA AAAAHFDGVE IFENDLLQFS GTPRDVRRIC EDLGLAIDMF QPFRDFDAPT PAQLARSLER AERKFDVMAE LGTPLILVCS NVQPDAIGDV DQLAEQFHQL AERAAKRGMR IAYEALAWGS QVKLFSQAWA VVERVNHPNL GLALDSFHTL SLRDDPAPIA KLPGDKIFYM QLADAPWLAW GPSDVLTYSR HYRCFPGQGE LDVTGFVRAA LDAGYTGPIS LEIFNDEFRS APARANAVDA MRSLLWLEEQ VRHTPPAPQA RPVTVPLFDP PPAPVLTGWS FIEFAVDPAT ATRLAGQLTS LGFARIGRHR SKDVDLYGQG DVRIVLNLEQ DSFARSHFDV HGTSVCALAL ATVDAQAALV RAEALACPRV TGRIGSDELS IPAVRSPDGS LLYFCDAKQG GHSFEADFII DAEALRNTPA GVGARVDHLT QALPGGQVEP WVLFYRAVLG LAPQRNTVLH DPYGIMRSRE IESADGAVRC SLMVSERDNT AVSRSVSRFG GAGVQQIAIG VGDAIATVTA LRQRGAPLLP VPHNYYDDLA AKYELDPAFL AALRAAGVMY ERDAKGEFLH AYTAPFEDRF EFEFVERRGA YDLYGSTNAP VRLAALAEWR ASHGR
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