Gene RSc3103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3103 
Symbol 
ID1221967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand+ 
Start bp3341193 
End bp3342296 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content64% 
IMG OID637239521 
Product4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein 
Protein accessionNP_521224 
Protein GI17547822 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATTCA CGCCTTGGGA AAACCCGATG GGCACCGCCG GCTTCGAGTT CATCGAATAC 
GCCGCGCCGG ACCCCGTCGC CATGGGCAAG CTGTTCGAGA AGATGGGCTT CAGCGCCATC 
GCGAAGCACC GCCACAAGAA CGTGACGCTG TACCGCCAGG GCGGCATCAA CTTCATCATC 
AACGCTGAAG CCGATTCGTT CGCGCAGCGC TTCGCGCGCC TGCACGGGCC GTCCATCTGC 
GCCATCGCCT TCCGCGTGCA GGACGCGGCC CTCGCCTACC AGCGCGCGCT GGAACTGGGC 
GCGTGGGGCT TCGACACCCA CAGCGGCCCG ATGGAGCTGA ACATCCCGGC GATCAAGGGC 
ATCGGCGATT CGCTGATCTA CCTGGTGGAC CGCTGGACCG GCAAGAACGG CGCCAAAGAC 
GTCGACATCG GCAACATCAG TATCTACGAC GTCGACTTCG TGCCCATTCC CGGCGCCAAC 
CCGAACCCCA TCGGGCACGG CCTGACCTAC ATCGACCACC TGACGCACAA CGTCTACCGT 
GGTCGCATGA AGGAGTGGGC CGAGTTCTAC GAACGCTTCT TCAACTTCCG CGAGATCCGC 
TATTTCGATA TCGAGGGCCA GGTCACCGGC GTGAAGAGCA AGGCCATGAC GAGCCCGTGC 
GGCAACATCC GCATTCCCAT CAACGAGGAA GGGACGGAGA AGGCCGGCCA GATCCAGGAA 
TACCTGGACA TGTACCACGG CGAGGGCATC CAGCACATCG CGCTGGGCTC GACCGACCTG 
CACCGGACGG TGGACGCGCT GCGCGGCAAC GGCATCAAGC TGCTGGACAC CATCGACACG 
TACTACGAGC TGGTCGACAA GCGGATCCCC GGCCATGGCG AGAACGTGGC GGAGCTGAAG 
AAGCGCAAGA TCCTGATCGA CGGCGCGCCG GGCGACCTGC TGCTGCAGAT CTTCTCGGAA 
AACCAGCTGG GCCCGATCTT CTTCGAGTTC ATCCAGCGCA AGGGCAACCA GGGCTTCGGC 
GAGGGCAACT TCAAGGCGCT GTTCGAGTCG ATCGAGCTCG ACCAGATGCG CCGCGGCGTG 
CTGAAGGCGG ATCAGCCGGC CTGA
 
Protein sequence
MSFTPWENPM GTAGFEFIEY AAPDPVAMGK LFEKMGFSAI AKHRHKNVTL YRQGGINFII 
NAEADSFAQR FARLHGPSIC AIAFRVQDAA LAYQRALELG AWGFDTHSGP MELNIPAIKG 
IGDSLIYLVD RWTGKNGAKD VDIGNISIYD VDFVPIPGAN PNPIGHGLTY IDHLTHNVYR 
GRMKEWAEFY ERFFNFREIR YFDIEGQVTG VKSKAMTSPC GNIRIPINEE GTEKAGQIQE 
YLDMYHGEGI QHIALGSTDL HRTVDALRGN GIKLLDTIDT YYELVDKRIP GHGENVAELK 
KRKILIDGAP GDLLLQIFSE NQLGPIFFEF IQRKGNQGFG EGNFKALFES IELDQMRRGV 
LKADQPA