45 homologs were found in PanDaTox collection
for query gene Nham_0909 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007964  Nham_0909  hypothetical protein  100 
 
 		 491 aa  983    Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_6537  hypothetical protein  57.7 
 
 		 467 aa  494  9.999999999999999e-139  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.866176  normal  1 
 
 
-
 
NC_011004  Rpal_2087  hypothetical protein  55.7 
 
 		 466 aa  468  9.999999999999999e-131  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073016  n/a   
 
 
-
 
NC_007778  RPB_3495  hypothetical protein  57.72 
 
 		 465 aa  459  9.999999999999999e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_1959  hypothetical protein  56.48 
 
 		 467 aa  457  1e-127  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_2525  TRAP transporter solute receptor TAXI family protein  49.16 
 
 		 486 aa  401  9.999999999999999e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.839724  normal  0.154925 
 
 
-
 
NC_007958  RPD_0702  TRAP transporter solute receptor TAXI family protein  45.72 
 
 		 480 aa  393  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.871087  normal  1 
 
 
-
 
NC_011004  Rpal_0409  TRAP transporter solute receptor, TAXI family  45.12 
 
 		 462 aa  388  1e-106  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.309942  n/a   
 
 
-
 
NC_009485  BBta_0249  hypothetical protein  47.82 
 
 		 448 aa  388  1e-106  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_0100  TRAP transporter solute receptor TAXI family protein  45.17 
 
 		 480 aa  378  1e-103  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_2265  TRAP transporter solute receptor TAXI family protein  33.33 
 
 		 442 aa  212  1e-53  Methylobacterium sp. 4-46  Bacteria  normal  1  decreased coverage  0.00194673 
 
 
-
 
NC_011894  Mnod_0342  TRAP transporter solute receptor, TAXI family  32.83 
 
 		 423 aa  208  2e-52  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0450847  n/a   
 
 
-
 
NC_011666  Msil_3025  TRAP transporter solute receptor, TAXI family  31.72 
 
 		 441 aa  186  7e-46  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010581  Bind_0899  hypothetical protein  27.13 
 
 		 437 aa  168  2e-40  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.727607  normal  0.541745 
 
 
-
 
NC_010511  M446_1545  TRAP-type uncharacterized transport system periplasmic component-like protein  29.83 
 
 		 468 aa  166  1.0000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2797  TRAP-type uncharacterized transport system periplasmic component-like protein  29.92 
 
 		 485 aa  165  2.0000000000000002e-39  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010511  M446_2036  TRAP-type uncharacterized transport system periplasmic component-like protein  28.6 
 
 		 463 aa  164  3e-39  Methylobacterium sp. 4-46  Bacteria  normal  1  hitchhiker  0.00372211 
 
 
-
 
NC_010581  Bind_3430  TRAP transporter solute receptor TAXI family protein  29.59 
 
 		 461 aa  164  4.0000000000000004e-39  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.199051 
 
 
-
 
NC_010505  Mrad2831_3542  TRAP-type uncharacterized transport system periplasmic component-like protein  28.85 
 
 		 472 aa  155  1e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.919124 
 
 
-
 
NC_010511  M446_1581  TRAP transporter solute receptor TAXI family protein  29.49 
 
 		 457 aa  154  2.9999999999999998e-36  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.193293 
 
 
-
 
NC_011894  Mnod_5694  TRAP-type uncharacterized transport system periplasmic component-like protein  29.04 
 
 		 477 aa  154  4e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_2259  TRAP-type uncharacterized transport system periplasmic component-like protein  27.23 
 
 		 469 aa  151  2e-35  Methylobacterium populi BJ001  Bacteria  normal  0.466386  normal  0.36502 
 
 
-
 
NC_011894  Mnod_0519  TRAP-type uncharacterized transport system periplasmic component-like protein  28.43 
 
 		 463 aa  151  2e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_2577  TRAP-type uncharacterized transport system periplasmic component-like protein  27.87 
 
 		 469 aa  146  7.0000000000000006e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  0.301233 
 
 
-
 
NC_010172  Mext_2302  TRAP-type uncharacterized transport system periplasmic component-like protein  27.66 
 
 		 474 aa  144  3e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.172272  hitchhiker  0.00762339 
 
 
-
 
NC_011666  Msil_2760  TRAP transporter solute receptor, TAXI family  28.48 
 
 		 433 aa  140  3.9999999999999997e-32  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011757  Mchl_0184  TRAP-type uncharacterized transport system periplasmic component-like protein  27.62 
 
 		 453 aa  139  1e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.864216  normal  0.611675 
 
 
-
 
NC_010581  Bind_2753  hypothetical protein  26.41 
 
 		 433 aa  138  2e-31  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_0239  TRAP-type uncharacterized transport system periplasmic component-like protein  27.37 
 
 		 453 aa  138  3.0000000000000003e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.264256  normal  1 
 
 
-
 
NC_010505  Mrad2831_4219  TRAP-type uncharacterized transport system periplasmic component-like protein  27.19 
 
 		 465 aa  135  1.9999999999999998e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.340628 
 
 
-
 
NC_010505  Mrad2831_5654  TRAP-type uncharacterized transport system periplasmic component-like protein  25.63 
 
 		 471 aa  134  3.9999999999999996e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010510  Mrad2831_5881  TRAP-type uncharacterized transport system periplasmic component-like protein  26.65 
 
 		 440 aa  131  3e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.810377 
 
 
-
 
NC_007298  Daro_2929  hypothetical protein  26.2 
 
 		 443 aa  128  2.0000000000000002e-28  Dechloromonas aromatica RCB  Bacteria  normal  0.0484025  normal  1 
 
 
-
 
NC_011894  Mnod_0107  TRAP-type uncharacterized transport system periplasmic component-like protein  25.97 
 
 		 453 aa  117  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011884  Cyan7425_4331  TRAP transporter solute receptor, TAXI family  23.25 
 
 		 453 aa  107  6e-22  Cyanothece sp. PCC 7425  Bacteria  normal  0.794472  normal  1 
 
 
-
 
NC_011884  Cyan7425_4597  TRAP transporter solute receptor, TAXI family  20.73 
 
 		 454 aa  104  3e-21  Cyanothece sp. PCC 7425  Bacteria  normal  0.244351  normal  1 
 
 
-
 
NC_010511  M446_4743  TRAP-type uncharacterized transport system periplasmic component-like protein  26.98 
 
 		 457 aa  95.9  1e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.704005  normal  1 
 
 
-
 
NC_011894  Mnod_3511  TRAP-type uncharacterized transport system periplasmic component-like protein  31.82 
 
 		 179 aa  83.6  0.000000000000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_011729  PCC7424_4573  TRAP transporter solute receptor, TAXI family  19.57 
 
 		 446 aa  80.1  0.00000000000009  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_011894  Mnod_2418  TRAP-type uncharacterized transport system periplasmic component-like protein  39.13 
 
 		 176 aa  65.5  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_1697  TRAP transporter solute receptor TAXI family protein  25 
 
 		 330 aa  60.1  0.00000009  Salinispora tropica CNB-440  Bacteria  normal  0.607751  normal  0.828936 
 
 
-
 
NC_008740  Maqu_2063  TRAP transporter solute receptor TAXI family protein  25.27 
 
 		 327 aa  54.7  0.000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.800081  n/a   
 
 
-
 
NC_009953  Sare_1695  TRAP transporter solute receptor TAXI family protein  23.83 
 
 		 315 aa  53.9  0.000006  Salinispora arenicola CNS-205  Bacteria  normal  1  decreased coverage  0.000228802 
 
 
-
 
NC_010681  Bphyt_0798  hypothetical protein  24.69 
 
 		 497 aa  46.2  0.001  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.375789 
 
 
-
 
NC_007951  Bxe_A3881  hypothetical protein  24.49 
 
 		 494 aa  43.5  0.01  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>