62 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dgeo_0031  CDS  NC_008025  28523  29392  870  hypothetical protein  YP_603503  decreased coverage  0.000287545  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0124  CDS  NC_008025  114089  114976  888  periplasmic binding protein  YP_603596  decreased coverage  1.58909e-06  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0165  CDS  NC_008025  153202  154107  906  single-strand binding protein  YP_603637  decreased coverage  7.79972e-05  normal  0.680564  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0166  CDS  NC_008025  154236  154544  309  30S ribosomal protein S6  YP_603638  decreased coverage  1.00451e-05  normal  0.435973  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0311  CDS  NC_008025  305682  308873  3192  hypothetical protein  YP_603783  normal  0.427486  decreased coverage  0.00324581  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0312  CDS  NC_008025  308870  311197  2328  hypothetical protein  YP_603784  normal  0.0887413  decreased coverage  0.00223033  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0313  CDS  NC_008025  311246  312199  954  hypothetical protein  YP_603785  normal  decreased coverage  0.00423345  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0314  CDS  NC_008025  312196  312777  582  hypothetical protein  YP_603786  normal  decreased coverage  0.00344451  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0316  CDS  NC_008025  313628  314575  948  beta-lactamase  YP_603788  normal  decreased coverage  0.00360568  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0317  CDS  NC_008025  314760  315617  858  cytochrome c, class I  YP_603789  normal  decreased coverage  0.00320646  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0318  CDS  NC_008025  315643  316305  663  Rieske (2Fe-2S) region  YP_603790  normal  0.711833  decreased coverage  0.00329133  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0319  CDS  NC_008025  316302  317615  1314  cytochrome b/b6-like protein  YP_603791  normal  0.0663276  decreased coverage  0.00372414  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0329  CDS  NC_008025  324989  325663  675  molybdopterin converting factor, subunit 1  YP_603801  hitchhiker  0.00555526  decreased coverage  0.00329133  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0330  CDS  NC_008025  329158  330324  1167  queuine tRNA-ribosyltransferase  YP_603802  normal  decreased coverage  0.00349082  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0467  CDS  NC_008025  482106  482639  534  acetyl-CoA carboxylase, biotin carboxyl carrier protein  YP_603939  decreased coverage  0.0054894  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0546  CDS  NC_008025  578107  580242  2136  DNA topoisomerase (ATP-hydrolyzing)  YP_604017  decreased coverage  2.77761e-05  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0617  CDS  NC_008025  658120  660468  2349  3-hydroxyacyl-CoA dehydrogenase, NAD-binding  YP_604088  decreased coverage  0.000684993  normal  0.851238  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0832  CDS  NC_008025  893184  893702  519  integral membrane protein  YP_604303  decreased coverage  3.57641e-05  normal  0.309934  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_0998  CDS  NC_008025  1071327  1072412  1086  PilT protein-like protein  YP_604467  decreased coverage  0.00567105  normal  0.0135719  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1104  CDS  NC_008025  1175007  1176341  1335  peptidase M23B  YP_604571  normal  0.109344  decreased coverage  0.00201556  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1105  CDS  NC_008025  1176338  1176703  366  response regulator receiver protein  YP_604572  normal  0.0411288  decreased coverage  0.00144137  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1106  CDS  NC_008025  1176746  1177657  912  pyridoxal biosynthesis lyase PdxS  YP_604573  hitchhiker  0.00472743  decreased coverage  0.00164202  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1107  CDS  NC_008025  1177654  1178259  606  glutamine amidotransferase subunit PdxT  YP_604574  hitchhiker  0.00213413  decreased coverage  0.0014311  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1109  CDS  NC_008025  1179022  1179768  747  alpha/beta hydrolase fold  YP_604576  decreased coverage  0.00126644  hitchhiker  0.00394602  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1110  CDS  NC_008025  1179765  1180967  1203  oxidoreductase-like protein  YP_604577  decreased coverage  0.00265336  hitchhiker  0.0048453  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1114  CDS  NC_008025  1183743  1184897  1155  Serine--pyruvate transaminase  YP_604581  normal  0.0516564  decreased coverage  0.00189491  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1115  CDS  NC_008025  1184910  1185560  651  metallophosphoesterase  YP_604582  normal  0.0817094  decreased coverage  0.00169926  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1116  CDS  NC_008025  1185589  1187085  1497  apolipoprotein N-acyltransferase  YP_604583  normal  0.208778  decreased coverage  0.000201014  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1117  CDS  NC_008025  1187014  1188123  1110  phage integrase  YP_604584  normal  0.343038  decreased coverage  0.00190839  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1118  CDS  NC_008025  1188202  1189164  963  diacylglycerol kinase, catalytic region  YP_604585  normal  0.867073  decreased coverage  0.00200137  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1119  CDS  NC_008025  1189192  1189560  369  cell surface receptor IPT/TIG  YP_604586  normal  decreased coverage  0.00154404  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1120  CDS  NC_008025  1189583  1191040  1458  aldehyde dehydrogenase  YP_604587  normal  decreased coverage  0.000801479  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1121  CDS  NC_008025  1191131  1192426  1296  histidyl-tRNA synthetase  YP_604588  normal  decreased coverage  0.00227645  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1122  CDS  NC_008025  1192441  1194174  1734  aspartyl-tRNA synthetase  YP_604589  normal  decreased coverage  0.00270961  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1124  CDS  NC_008025  1194925  1196775  1851  excinuclease ABC subunit C  YP_604591  normal  0.957907  decreased coverage  0.0034731  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1139  CDS  NC_008025  1208919  1211249  2331  ATP-dependent DNA helicase RecG  YP_604605  decreased coverage  0.00836981  normal  0.0179484  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1205  CDS  NC_008025  1282878  1284032  1155  extracellular ligand-binding receptor  YP_604671  decreased coverage  3.03202e-06  normal  0.322412  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1234  CDS  NC_008025  1312999  1314186  1188  transcription elongation factor NusA  YP_604699  decreased coverage  2.27935e-05  normal  0.970518  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1346  CDS  NC_008025  1433106  1434317  1212  RNA polymerase, sigma 28 subunit  YP_604810  decreased coverage  0.0047303  normal  0.189743  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1484  CDS  NC_008025  1570027  1570275  249  hypothetical protein  YP_604948  decreased coverage  0.00652286  normal  0.748996  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1577  CDS  NC_008025  1676893  1678656  1764  30S ribosomal protein S1  YP_605041  decreased coverage  0.00419028  normal  0.668764  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1682  CDS  NC_008025  1788130  1790850  2721  aconitate hydratase  YP_605146  decreased coverage  0.00945136  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1863  CDS  NC_008025  1962777  1963064  288  30S ribosomal protein S19  YP_605327  decreased coverage  0.00494642  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1908  CDS  NC_008025  2006540  2007220  681  hypothetical protein  YP_605372  decreased coverage  2.74657e-08  decreased coverage  0.00465909  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
 
Dgeo_1909  CDS  NC_008025  2007222  2008352  1131  hypothetical protein  YP_605373  hitchhiker  1.7114e-05  decreased coverage  0.00513377  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1911  CDS  NC_008025  2013693  2014646  954  periplasmic protein-like protein  YP_605375  decreased coverage  0.00932683  normal  0.0114892  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1928  CDS  NC_008025  2031373  2032992  1620  major facilitator transporter  YP_605392  decreased coverage  0.00178599  normal  0.278275  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1946  CDS  NC_008025  2048035  2048826  792  molybdopterin dehydrogenase, FAD-binding  YP_605409  decreased coverage  0.00353773  normal  0.723918  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1947  CDS  NC_008025  2048844  2051234  2391  aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding  YP_605410  decreased coverage  0.00867187  normal  0.896293  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_1995  CDS  NC_008025  2097321  2097752  432  hypothetical protein  YP_605458  decreased coverage  2.40255e-08  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_2076  CDS  NC_008025  2186109  2187998  1890  molecular chaperone DnaK  YP_605539  decreased coverage  8.34222e-05  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_2189  CDS  NC_008025  2309706  2310524  819  extracellular solute-binding protein  YP_605652  decreased coverage  9.25831e-07  normal  0.633226  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_2190  CDS  NC_008025  2310648  2310923  276  30S ribosomal protein S15  YP_605653  decreased coverage  9.60154e-09  normal  0.597988  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_2279  CDS  NC_008025  2401336  2402271  936  hypothetical protein  YP_605742  decreased coverage  0.000123054  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_2593  CDS  NC_008010  461155  461490  336  hypothetical protein  YP_594101  decreased coverage  0.000327401  n/a    Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0008  rRNA  NC_008025  325852  328741  2890  23S ribosomal RNA    normal  0.112108  decreased coverage  0.00656926  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0009  rRNA  NC_008025  328825  328941  117  5S ribosomal RNA    normal  decreased coverage  0.00283898  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0010  tRNA  NC_008025  328951  329026  76  tRNA-Gly    normal  decreased coverage  0.00274853  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0013  rRNA  NC_008025  400326  401818  1493  16S ribosomal RNA    decreased coverage  1.16367e-05  normal  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0041  tRNA  NC_008025  2010487  2010562  76  tRNA-Gly    normal  0.297349  decreased coverage  0.00434413  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0042  rRNA  NC_008025  2010573  2010689  117  5S ribosomal RNA    normal  0.312385  decreased coverage  0.0044005  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Dgeo_R0043  rRNA  NC_008025  2010773  2013662  2890  23S ribosomal RNA    normal  0.0363579  decreased coverage  0.0035918  Deinococcus geothermalis DSM 11300  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>