Gene Dgeo_1928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDgeo_1928 
Symbol 
ID4057676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDeinococcus geothermalis DSM 11300 
KingdomBacteria 
Replicon accessionNC_008025 
Strand
Start bp2031373 
End bp2032992 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content67% 
IMG OID641230960 
Productmajor facilitator transporter 
Protein accessionYP_605392 
Protein GI94986028 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00178599 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.278275 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCTG CTCCTTCTTC TGCCGGCCTC GCACCTCGGG ACAAGATCTT GGCCTTTGTC 
GGCATCCTGA CGGTGCTGTT TCTCTCCAGC CTGAATATGA CGGTGGTCGG GAGCGCGATG
CCGCGCGTGA TCTCGGACCT GGGCGGCTTT CACCTGTACG CCTGGGCCTT TACCGCCTAC
TCGCTCGCCA CCACAATTAC CGTCCCCATC GTGGGCACGG TCAGCGACCG CTATGGCCGC
CGCCCACTGA TTCTGCTCGG TATTGTTGTG TTCACCCTGG GCAGCGTGCT GCTGGGCTTC
GTGCAAAACA TGAATCAGCT GATTGTGCTG CGGGCGCTGC AGGGCGTGGG CGGCGGCATG
CTGATGGCGA TGAGCTTCAC CGCCATCGCG GACCTCTTCA CGCCCATCGA GCGTGGCCGC
TACCAAGGGT ACACCGGGGC GGTCTGGGGC ATCAGCAGTG TGGTGGGGCC GCTGGTGGGG
GGCTTCCTGA CCGACCATTT GGGCTGGCGC AGCGTGTTCT TCGTGAACGT GCCCTTTGCG
CTGCTGGCAC TGTACTTTGT CGGCCGTTTC TTCCGGATGC CTGCTCCCAG CGCTTCGCGC
ATGCAGCGTC CGTTTGACGC GCTGGGGGCG CTGCTGCTCG CGGGCGCGGT CGTAACCCTG
ACACTGGCCC TGTCCTGGGG AGGCGGCACC TATGCCTGGG ACAGTCCCCG CATTCTGGGC
CTGCTGGCCG CGACCCTGGT GCTGGGCGGA GGGTATGTGT GGCACAGCCG CCAGCAGGCG
CAGCCCATCC TCAACCTGCG ACTGCTGCGT GACCCGGCCA TCTCGCTCGC GTCCTTGGCG
GGCTTCTTGA CGAGCGCGGG GATGTACGCC GCGATTCTGT ACCTGCCGCT CTACATGCAG
GGCGTGCGGG GCAGCAGCGC CAGCGGGAGC GGCCTGGCCC TCACGCCCCT GATGTTTGGA
TTGATCGTCA CGAGCACCCT CAGCGGCCAG ATCGTCAGCC GCACCGGGCG CTACAAGGGG
CTGATTATGG GAGGCGCTCT GGTCGCCACC GCCGCCCTGC TGCTCAGCAC CACGCTGAGC
ACCACAACGC CGCTGTGGAT CGCGGTCGGG CTGATGGTGC TGCTGGGTCT GGGCCTTGGC
CCGGTCAACA GCCAGCTCAC GCTCGCGGTG CAGAATGCCG CGCCGCGCGA ACAGCTTGGC
AGCGCCACCA GCGGCAACCA GTTTTTCCGG CAGATCGGCG GCACGCTGGC CGTCAGCCTC
TTCGGGGCGC TGGTGAACGC GCAGCTCGCG CAGAACCTCG CCGCAAAGCT GCCGCCCGCA
GCTGCCCAGC TGCCCGCCCC CATGCAGGAC GCCATCGCCA ACCCCAACGT GCTGTCGAGC
CCTCAGGCCA CCGGCCAACT GGAAGCGGCC CTGGCCCGTC TGGGTCACGC GGACCTGATC
ATGCCCATTC TGACGGCCCT GCGCGGCGTG ATGGCGGGCG CCATTGATCA CGTCTTCCTG
ATTGCGGGTG TGCTGGTCGG TGTCGCCTTT TTGGTCACGG CCCTGATGCC CGAACGGCCC
CTCGCCGGGC GGAGAGCCGG AGCGCGGGTG GAGGGACGGC AGGCGGCGGC GACGGATTGA
 
Protein sequence
MTAAPSSAGL APRDKILAFV GILTVLFLSS LNMTVVGSAM PRVISDLGGF HLYAWAFTAY 
SLATTITVPI VGTVSDRYGR RPLILLGIVV FTLGSVLLGF VQNMNQLIVL RALQGVGGGM
LMAMSFTAIA DLFTPIERGR YQGYTGAVWG ISSVVGPLVG GFLTDHLGWR SVFFVNVPFA
LLALYFVGRF FRMPAPSASR MQRPFDALGA LLLAGAVVTL TLALSWGGGT YAWDSPRILG
LLAATLVLGG GYVWHSRQQA QPILNLRLLR DPAISLASLA GFLTSAGMYA AILYLPLYMQ
GVRGSSASGS GLALTPLMFG LIVTSTLSGQ IVSRTGRYKG LIMGGALVAT AALLLSTTLS
TTTPLWIAVG LMVLLGLGLG PVNSQLTLAV QNAAPREQLG SATSGNQFFR QIGGTLAVSL
FGALVNAQLA QNLAAKLPPA AAQLPAPMQD AIANPNVLSS PQATGQLEAA LARLGHADLI
MPILTALRGV MAGAIDHVFL IAGVLVGVAF LVTALMPERP LAGRRAGARV EGRQAAATD