Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dgeo_1928 |
Symbol | |
ID | 4057676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Deinococcus geothermalis DSM 11300 |
Kingdom | Bacteria |
Replicon accession | NC_008025 |
Strand | - |
Start bp | 2031373 |
End bp | 2032992 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641230960 |
Product | major facilitator transporter |
Protein accession | YP_605392 |
Protein GI | 94986028 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00178599 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.278275 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCTG CTCCTTCTTC TGCCGGCCTC GCACCTCGGG ACAAGATCTT GGCCTTTGTC GGCATCCTGA CGGTGCTGTT TCTCTCCAGC CTGAATATGA CGGTGGTCGG GAGCGCGATG CCGCGCGTGA TCTCGGACCT GGGCGGCTTT CACCTGTACG CCTGGGCCTT TACCGCCTAC TCGCTCGCCA CCACAATTAC CGTCCCCATC GTGGGCACGG TCAGCGACCG CTATGGCCGC CGCCCACTGA TTCTGCTCGG TATTGTTGTG TTCACCCTGG GCAGCGTGCT GCTGGGCTTC GTGCAAAACA TGAATCAGCT GATTGTGCTG CGGGCGCTGC AGGGCGTGGG CGGCGGCATG CTGATGGCGA TGAGCTTCAC CGCCATCGCG GACCTCTTCA CGCCCATCGA GCGTGGCCGC TACCAAGGGT ACACCGGGGC GGTCTGGGGC ATCAGCAGTG TGGTGGGGCC GCTGGTGGGG GGCTTCCTGA CCGACCATTT GGGCTGGCGC AGCGTGTTCT TCGTGAACGT GCCCTTTGCG CTGCTGGCAC TGTACTTTGT CGGCCGTTTC TTCCGGATGC CTGCTCCCAG CGCTTCGCGC ATGCAGCGTC CGTTTGACGC GCTGGGGGCG CTGCTGCTCG CGGGCGCGGT CGTAACCCTG ACACTGGCCC TGTCCTGGGG AGGCGGCACC TATGCCTGGG ACAGTCCCCG CATTCTGGGC CTGCTGGCCG CGACCCTGGT GCTGGGCGGA GGGTATGTGT GGCACAGCCG CCAGCAGGCG CAGCCCATCC TCAACCTGCG ACTGCTGCGT GACCCGGCCA TCTCGCTCGC GTCCTTGGCG GGCTTCTTGA CGAGCGCGGG GATGTACGCC GCGATTCTGT ACCTGCCGCT CTACATGCAG GGCGTGCGGG GCAGCAGCGC CAGCGGGAGC GGCCTGGCCC TCACGCCCCT GATGTTTGGA TTGATCGTCA CGAGCACCCT CAGCGGCCAG ATCGTCAGCC GCACCGGGCG CTACAAGGGG CTGATTATGG GAGGCGCTCT GGTCGCCACC GCCGCCCTGC TGCTCAGCAC CACGCTGAGC ACCACAACGC CGCTGTGGAT CGCGGTCGGG CTGATGGTGC TGCTGGGTCT GGGCCTTGGC CCGGTCAACA GCCAGCTCAC GCTCGCGGTG CAGAATGCCG CGCCGCGCGA ACAGCTTGGC AGCGCCACCA GCGGCAACCA GTTTTTCCGG CAGATCGGCG GCACGCTGGC CGTCAGCCTC TTCGGGGCGC TGGTGAACGC GCAGCTCGCG CAGAACCTCG CCGCAAAGCT GCCGCCCGCA GCTGCCCAGC TGCCCGCCCC CATGCAGGAC GCCATCGCCA ACCCCAACGT GCTGTCGAGC CCTCAGGCCA CCGGCCAACT GGAAGCGGCC CTGGCCCGTC TGGGTCACGC GGACCTGATC ATGCCCATTC TGACGGCCCT GCGCGGCGTG ATGGCGGGCG CCATTGATCA CGTCTTCCTG ATTGCGGGTG TGCTGGTCGG TGTCGCCTTT TTGGTCACGG CCCTGATGCC CGAACGGCCC CTCGCCGGGC GGAGAGCCGG AGCGCGGGTG GAGGGACGGC AGGCGGCGGC GACGGATTGA
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Protein sequence | MTAAPSSAGL APRDKILAFV GILTVLFLSS LNMTVVGSAM PRVISDLGGF HLYAWAFTAY SLATTITVPI VGTVSDRYGR RPLILLGIVV FTLGSVLLGF VQNMNQLIVL RALQGVGGGM LMAMSFTAIA DLFTPIERGR YQGYTGAVWG ISSVVGPLVG GFLTDHLGWR SVFFVNVPFA LLALYFVGRF FRMPAPSASR MQRPFDALGA LLLAGAVVTL TLALSWGGGT YAWDSPRILG LLAATLVLGG GYVWHSRQQA QPILNLRLLR DPAISLASLA GFLTSAGMYA AILYLPLYMQ GVRGSSASGS GLALTPLMFG LIVTSTLSGQ IVSRTGRYKG LIMGGALVAT AALLLSTTLS TTTPLWIAVG LMVLLGLGLG PVNSQLTLAV QNAAPREQLG SATSGNQFFR QIGGTLAVSL FGALVNAQLA QNLAAKLPPA AAQLPAPMQD AIANPNVLSS PQATGQLEAA LARLGHADLI MPILTALRGV MAGAIDHVFL IAGVLVGVAF LVTALMPERP LAGRRAGARV EGRQAAATD
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