Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dgeo_1106 |
Symbol | |
ID | 4058976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Deinococcus geothermalis DSM 11300 |
Kingdom | Bacteria |
Replicon accession | NC_008025 |
Strand | + |
Start bp | 1176746 |
End bp | 1177657 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641230122 |
Product | pyridoxal biosynthesis lyase PdxS |
Protein accession | YP_604573 |
Protein GI | 94985209 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0214] Pyridoxine biosynthesis enzyme |
TIGRFAM ID | [TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00472743 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00164202 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | TTGTTTTACC CTCTTTCCAT GACCGAGCAG AGCCAGACCG GAACCACCGA GATCAAGCGG GGCTTCGCCG AGATGTTCAA GGGTGGCGTG ATCATGGATG TGGTGACGGC CGATCAGGCG CGCATTGCGG AGGCGGCCGG CGCGACGGCC GTGATGGCGC TGGAGCGCGT TCCAGCGGAT ATCCGCAAGG ACGGCGGCGT GGCCCGGATG AGTGATCCCC GGATGATCAA GGAGATCATT GAGGCCGTCA CCATCCCGGT GATGGCGAAA GTCCGCATCG GCCACTTTGT GGAGGCGCAG ATTCTGGAGG CCATCGGTGT GGACTTTATC GACGAGTCGG AGGTGCTCAC CCCCGCCGAC GACCAGTACC ACATCGAGAA GACCCAATTC AGGGTGCCCT TTGTCTGCGG CGCCAAGAAC CTGGGCGAGG CCCTGCGCCG CATTGGGGAG GGGGCCAGCA TGATCCGCAC CAAGGGCGAG GCCGGGACCG GCAACATCAT CGAGGCGGTG CGCCACGCCC GCACGGTGCT GGGCGAGATC CGCGCCATCC AGGCCCGCCC GAGTGACGAA TTGATGACGG TCGCCCGCGA CCTCCAGGCC CCCTACCACC TGGTGCAGTA CGTTCACCGG CACGGCAAAC TGCCGGTGGT GAATTTCGCA GCGGGCGGCG TCGCCACCCC CGCCGATGCG GCCCTGATGA TGCACCTGGG CCTCGACGGG GTCTTTGTGG GCAGCGGCAT TTTCAAGAGT GACCACCCCG AGCGCCGCGC CCAGGCCATT GTGAAGGCCG TCACCCATTA CCAGAACCCC GACGTGCTGG CCGAGATCAG CGAGGACCTC GGTGCGCCGA TGACCGGCAT CAACATCGAC AGCTTGATTC CCGAACAGCG CCTGGCGGGG CGCGGCTGGT GA
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Protein sequence | MFYPLSMTEQ SQTGTTEIKR GFAEMFKGGV IMDVVTADQA RIAEAAGATA VMALERVPAD IRKDGGVARM SDPRMIKEII EAVTIPVMAK VRIGHFVEAQ ILEAIGVDFI DESEVLTPAD DQYHIEKTQF RVPFVCGAKN LGEALRRIGE GASMIRTKGE AGTGNIIEAV RHARTVLGEI RAIQARPSDE LMTVARDLQA PYHLVQYVHR HGKLPVVNFA AGGVATPADA ALMMHLGLDG VFVGSGIFKS DHPERRAQAI VKAVTHYQNP DVLAEISEDL GAPMTGINID SLIPEQRLAG RGW
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