Gene Dgeo_1106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDgeo_1106 
Symbol 
ID4058976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDeinococcus geothermalis DSM 11300 
KingdomBacteria 
Replicon accessionNC_008025 
Strand
Start bp1176746 
End bp1177657 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content66% 
IMG OID641230122 
Productpyridoxal biosynthesis lyase PdxS 
Protein accessionYP_604573 
Protein GI94985209 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0214] Pyridoxine biosynthesis enzyme 
TIGRFAM ID[TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00472743 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00164202 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
TTGTTTTACC CTCTTTCCAT GACCGAGCAG AGCCAGACCG GAACCACCGA GATCAAGCGG 
GGCTTCGCCG AGATGTTCAA GGGTGGCGTG ATCATGGATG TGGTGACGGC CGATCAGGCG
CGCATTGCGG AGGCGGCCGG CGCGACGGCC GTGATGGCGC TGGAGCGCGT TCCAGCGGAT
ATCCGCAAGG ACGGCGGCGT GGCCCGGATG AGTGATCCCC GGATGATCAA GGAGATCATT
GAGGCCGTCA CCATCCCGGT GATGGCGAAA GTCCGCATCG GCCACTTTGT GGAGGCGCAG
ATTCTGGAGG CCATCGGTGT GGACTTTATC GACGAGTCGG AGGTGCTCAC CCCCGCCGAC
GACCAGTACC ACATCGAGAA GACCCAATTC AGGGTGCCCT TTGTCTGCGG CGCCAAGAAC
CTGGGCGAGG CCCTGCGCCG CATTGGGGAG GGGGCCAGCA TGATCCGCAC CAAGGGCGAG
GCCGGGACCG GCAACATCAT CGAGGCGGTG CGCCACGCCC GCACGGTGCT GGGCGAGATC
CGCGCCATCC AGGCCCGCCC GAGTGACGAA TTGATGACGG TCGCCCGCGA CCTCCAGGCC
CCCTACCACC TGGTGCAGTA CGTTCACCGG CACGGCAAAC TGCCGGTGGT GAATTTCGCA
GCGGGCGGCG TCGCCACCCC CGCCGATGCG GCCCTGATGA TGCACCTGGG CCTCGACGGG
GTCTTTGTGG GCAGCGGCAT TTTCAAGAGT GACCACCCCG AGCGCCGCGC CCAGGCCATT
GTGAAGGCCG TCACCCATTA CCAGAACCCC GACGTGCTGG CCGAGATCAG CGAGGACCTC
GGTGCGCCGA TGACCGGCAT CAACATCGAC AGCTTGATTC CCGAACAGCG CCTGGCGGGG
CGCGGCTGGT GA
 
Protein sequence
MFYPLSMTEQ SQTGTTEIKR GFAEMFKGGV IMDVVTADQA RIAEAAGATA VMALERVPAD 
IRKDGGVARM SDPRMIKEII EAVTIPVMAK VRIGHFVEAQ ILEAIGVDFI DESEVLTPAD
DQYHIEKTQF RVPFVCGAKN LGEALRRIGE GASMIRTKGE AGTGNIIEAV RHARTVLGEI
RAIQARPSDE LMTVARDLQA PYHLVQYVHR HGKLPVVNFA AGGVATPADA ALMMHLGLDG
VFVGSGIFKS DHPERRAQAI VKAVTHYQNP DVLAEISEDL GAPMTGINID SLIPEQRLAG
RGW