| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dgeo_1577 |
|---|
| Symbol | rpsA |
|---|
| ID | 4057268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Deinococcus geothermalis DSM 11300 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008025 |
|---|
| Strand | + |
|---|
| Start bp | 1676893 |
|---|
| End bp | 1678656 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641230599 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_605041 |
|---|
| Protein GI | 94985677 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00419028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.668764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACC AGACCCAGAC CCCCGCCACT GAGGGCGGGA CCACTCAGCC CATGCCGGGC
ACCGAGCAGA CCAGTAGCGG GCAAACCAGC AGCGGGCAGA CCCCGAGCCA GCCGCAGGCC
GCACCCGCCA GCACCGACGA GCGCGAATAC CCCGCGATGA CCATGGAGGA TGTCCTCGCC
AGCGAGGCGC AGGAACCCCA GACGGTCAGC CGCGGTGACA TCGTGGACGG GACCGTGGTG
TTTATCGGCC AGGAGGGCAT CGCGGTGGAT GTCGGCGCGA AGGTGGAAGG GATCATTCCC
CTCAACCAGA TCGGCGACGA ACCCGTCACA CTGGAGCAGG CCCAGCAGAT GTACAAGCCC
GGTGACCAGA TCGAGGCGTA TGTCGTGCGG GTGGACCTCG CCAACAACCA GATCGTCCTC
TCCAAGAAGC GGGCCGATCA GGACAAGGGC TGGCGCGTGC TGGAGCGGAT GCAGGAGCAG
GACGAGGCCT TCGAGGTCGA GGTGCTGGAG AAGGTGCGCG GCGGACTCGT GGCGCAGGTC
GAAGGCATCC GCGCGTTCCT GCCTGCCTCC CAGGTGGACA CCCGCCGGGT GAATGATCTC
GATCCCTATG TGGGCAAGCC CCTCATGGTC AAGCTGATCG AGCTGAACCG CAAGCGCAAC
CGCGTGATCA TCAGTCACCG CGCCATTCTG GAAGCCCAGA AGGCCAAGGC GCGCGAACAG
ACCATCGGCA AGCTGGTGCC TGGCGCTCAG TTTGAGGGTG AAGTCGTCGA GATTACCGAC
TTTGGCGTGT TTGTGAACCT GGGCGGCATC GACGGTCTGG TTCACCGCAG CGAGCTGACC
TATGGCCGCT TCAACCACCC CCGCGACGTG GTCAAGGTGG GTGACAAGGT GCAGGTGCAG
GTCATCGATG TGGACGAGGG ACGCGAGCGG ATCAACCTCT CCATGAAGTC GCTGACCCAA
GATCCCTGGG AAGGGGCGGT CGAGAAGTAC CACATCGGCC AGCGCGTGCG GGGCAAGGTC
ACCAACCTCA CCAACTTCGG AGCGTTCGTG GAACTGGAAC CCGGCCTGGA AGGCCTGGTC
CACGTCAGCG AGATGAGCTG GACCAAGCGC GTTCGTCACC CCAACGAGGT CCTGAAGGAA
GGGGACGAGG TCGAAGCCGT CATCTTGCGC ATCGATCCTA AAGAGCGCCG CATCAGCCTG
GGGATTCGGC AGACCACGGA CGATCCGTGG AGCGCCCTGC CTGACCGCTA CCCGCCCGGC
ACGCCGGTTA AGGGCAAGAT CACCGGCATG ACCGACTTCG GCGTCTTTAT GGAGATCGAA
GAGGGCATCG AGGGTCTGAT CCACATCAGC GAACTCGACA CGCAGCGCGT GAACAACCCC
GCCGACCTCT TCAAGAAGGG CGACGAGATC GAGGCTGTGA TCCTGAATAT CGACCCGGTC
GAGCAGCGTG CAAGCCTGTC GCGCCGCCGT GCGTTGGGCG GCGGTGGCCC GGTGCGCGAC
TACGTCAGCC AAGGTGGCGG CAGCCGCAGC GACCGTTACA GCGGTGGCGG TGGTCAGGGT
GGCCGCAGCG GCGGGCGCGG TGGTCGGAGC GGCGGCGCCG ACTACAACTA CAACGCCAAG
GACGCCCAGC AGGGCGGCAA GATCAGCACG AAGCTGGGCG ACGTGTACGC CGACCTCTTC
GCGCAGTTCG GCCTGGGCGG CGACAACAAG AAGGACAGTG CCCAGGGCGA AGGCCAAGGG
AACACCGAGA AGCAGGGCGA GTAA
|
|---|
| Protein sequence | MEDQTQTPAT EGGTTQPMPG TEQTSSGQTS SGQTPSQPQA APASTDEREY PAMTMEDVLA
SEAQEPQTVS RGDIVDGTVV FIGQEGIAVD VGAKVEGIIP LNQIGDEPVT LEQAQQMYKP
GDQIEAYVVR VDLANNQIVL SKKRADQDKG WRVLERMQEQ DEAFEVEVLE KVRGGLVAQV
EGIRAFLPAS QVDTRRVNDL DPYVGKPLMV KLIELNRKRN RVIISHRAIL EAQKAKAREQ
TIGKLVPGAQ FEGEVVEITD FGVFVNLGGI DGLVHRSELT YGRFNHPRDV VKVGDKVQVQ
VIDVDEGRER INLSMKSLTQ DPWEGAVEKY HIGQRVRGKV TNLTNFGAFV ELEPGLEGLV
HVSEMSWTKR VRHPNEVLKE GDEVEAVILR IDPKERRISL GIRQTTDDPW SALPDRYPPG
TPVKGKITGM TDFGVFMEIE EGIEGLIHIS ELDTQRVNNP ADLFKKGDEI EAVILNIDPV
EQRASLSRRR ALGGGGPVRD YVSQGGGSRS DRYSGGGGQG GRSGGRGGRS GGADYNYNAK
DAQQGGKIST KLGDVYADLF AQFGLGGDNK KDSAQGEGQG NTEKQGE
|
|---|
| |