52 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
RPB_0625  CDS  NC_007778  706206  707723  1518  hypothetical protein  YP_484247  decreased coverage  0.00759808  normal  0.677515  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
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RPB_0938  CDS  NC_007778  1085083  1085580  498  MarR family transcriptional regulator  YP_484559  decreased coverage  0.00631452  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1129  CDS  NC_007778  1297671  1298177  507  hypothetical protein  YP_484750  decreased coverage  0.00426459  normal  0.464003  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1272  CDS  NC_007778  1458328  1459926  1599  flagellar MS-ring protein  YP_484893  decreased coverage  0.000378845  normal  0.795293  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1726  CDS  NC_007778  1967570  1969534  1965  squalene cyclase  YP_485345  decreased coverage  0.00651785  normal  0.158685  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
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RPB_1754  CDS  NC_007778  2007058  2008818  1761  ferredoxin-nitrite reductase  YP_485373  normal  0.188302  decreased coverage  0.00588237  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1843  CDS  NC_007778  2109287  2110162  876  YdjC-like protein  YP_485462  normal  decreased coverage  0.000761949  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1844  CDS  NC_007778  2110159  2111202  1044  glycosyl transferase family protein  YP_485463  normal  decreased coverage  0.000858357  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1846  CDS  NC_007778  2112282  2113439  1158  ATP phosphoribosyltransferase regulatory subunit  YP_485465  normal  decreased coverage  0.000726333  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1847  CDS  NC_007778  2113572  2114327  756  16S ribosomal RNA methyltransferase RsmE  YP_485466  normal  decreased coverage  0.000659643  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1848  CDS  NC_007778  2114534  2115253  720  hypothetical protein  YP_485467  normal  decreased coverage  0.000665056  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1849  CDS  NC_007778  2115250  2116200  951  4-hydroxybenzoate polyprenyltransferase  YP_485468  normal  decreased coverage  0.000654272  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1850  CDS  NC_007778  2116282  2116803  522  permease  YP_485469  normal  0.478457  decreased coverage  0.000494055  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1851  CDS  NC_007778  2116840  2117364  525  hypothetical protein  YP_485470  normal  0.65357  decreased coverage  0.000510248  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1852  CDS  NC_007778  2117661  2119058  1398  peptidase U62, modulator of DNA gyrase  YP_485471  normal  0.405759  decreased coverage  0.000697877  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1853  CDS  NC_007778  2119099  2119860  762  inositol-1(or 4)-monophosphatase  YP_485472  normal  0.0604801  decreased coverage  0.000548461  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1854  CDS  NC_007778  2119896  2120141  246  hypothetical protein  YP_485473  normal  0.0677881  decreased coverage  0.000466898  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1855  CDS  NC_007778  2120158  2121504  1347  three-deoxy-D-manno-octulosonic-acid transferase-like  YP_485474  normal  0.123633  decreased coverage  0.000681273  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1909  CDS  NC_007778  2182023  2183207  1185  hypothetical protein  YP_485528  decreased coverage  0.0057636  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1982  CDS  NC_007778  2252207  2252407  201  hypothetical protein  YP_485601  decreased coverage  0.00294957  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1983  CDS  NC_007778  2252409  2252978  570  filamentation induced by cAMP protein Fic  YP_485602  decreased coverage  0.00370142  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_1992  CDS  NC_007778  2263174  2264574  1401  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase  YP_485611  decreased coverage  0.00736654  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2099  CDS  NC_007778  2386327  2387250  924  binding-protein dependent transport system inner membrane protein  YP_485716  normal  0.642563  decreased coverage  9.98416e-05  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2100  CDS  NC_007778  2387545  2388531  987  NAD-dependent epimerase/dehydratase  YP_485717  normal  0.415706  decreased coverage  0.000106106  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2171  CDS  NC_007778  2466435  2467268  834  hypothetical protein  YP_485788  normal  0.532513  decreased coverage  0.00800855  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2187  CDS  NC_007778  2481454  2482629  1176  hypothetical protein  YP_485804  decreased coverage  0.00178939  normal  0.0794458  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2304  CDS  NC_007778  2658883  2659131  249  30S ribosomal protein S17  YP_485920  decreased coverage  0.000928394  normal  0.101475  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2386  CDS  NC_007778  2738107  2739144  1038  hypothetical protein  YP_486002  decreased coverage  0.000815162  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2416  CDS  NC_007778  2768633  2769391  759  NUDIX hydrolase  YP_486032  decreased coverage  0.00201354  normal  0.156459  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2548  CDS  NC_007778  2923132  2924046  915  binding-protein dependent transport system inner membrane protein  YP_486163  decreased coverage  0.00362276  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2607  CDS  NC_007778  2990694  2991086  393  DNA-directed RNA polymerase subunit omega  YP_486221  decreased coverage  0.00298684  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2653  CDS  NC_007778  3032049  3034124  2076  methyl-accepting chemotaxis sensory transducer  YP_486266  decreased coverage  0.00184965  normal  0.0777916  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2828  CDS  NC_007778  3222259  3223254  996  30S ribosomal protein S2  YP_486441  decreased coverage  0.00696653  normal  0.845616  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_2860  CDS  NC_007778  3260290  3262989  2700  glycosyl transferase family protein  YP_486473  decreased coverage  0.00529842  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3009  CDS  NC_007778  3429731  3432913  3183  ribonuclease  YP_486622  decreased coverage  0.00611074  normal  0.333184  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3361  CDS  NC_007778  3844041  3845195  1155  hypothetical protein  YP_486968  normal  0.278871  decreased coverage  0.00419079  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3362  CDS  NC_007778  3845203  3845529  327  rhodanese-like protein  YP_486969  normal  decreased coverage  0.00352544  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3368  CDS  NC_007778  3850187  3852154  1968  ABC transporter related  YP_486975  normal  decreased coverage  0.00530466  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3369  CDS  NC_007778  3852348  3852947  600  hypothetical protein  YP_486976  normal  0.510631  decreased coverage  0.00352544  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3371  CDS  NC_007778  3855210  3856808  1599  putative alpha-isopropylmalate/homocitrate synthase family transferase  YP_486978  decreased coverage  0.00710178  normal  0.0275974  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3381  CDS  NC_007778  3864911  3866668  1758  NAD synthetase  YP_486988  decreased coverage  0.000863364  normal  0.0990163  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3833  CDS  NC_007778  4375641  4376702  1062  hypothetical protein  YP_487437  decreased coverage  0.00492954  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3882  CDS  NC_007778  4436412  4437638  1227  hypothetical protein  YP_487486  decreased coverage  0.00664536  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3923  CDS  NC_007778  4475763  4476269  507  hypothetical protein  YP_487527  decreased coverage  0.000190971  normal  0.484553  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3924  CDS  NC_007778  4476379  4476972  594  hypothetical protein  YP_487528  decreased coverage  1.57363e-05  normal  0.496262  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_3941  CDS  NC_007778  4497283  4498752  1470  hypothetical protein  YP_487545  decreased coverage  0.00618827  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_4002  CDS  NC_007778  4568688  4569626  939  chlorophyll synthesis pathway protein BchC  YP_487606  normal  0.232331  decreased coverage  0.000580255  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_4003  CDS  NC_007778  4569695  4570837  1143  O-methyltransferase, family 2  YP_487607  normal  0.414327  decreased coverage  0.000643794  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_4258  CDS  NC_007778  4844127  4844429  303  excinuclease ABC subunit C  YP_487857  decreased coverage  0.00754458  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_4361  CDS  NC_007778  4945580  4946212  633  DSBA oxidoreductase  YP_487959  decreased coverage  0.00151652  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_4362  CDS  NC_007778  4946236  4946889  654  ErfK/YbiS/YcfS/YnhG  YP_487960  decreased coverage  0.00426459  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
-
 
RPB_R0022  misc_RNA  NC_007778  2253044  2253412  369  RNA component of RNaseP    decreased coverage  0.00496302  normal  Rhodopseudomonas palustris HaA2  Bacteria 
 
 
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