| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_2860 |
|---|
| Symbol | |
|---|
| ID | 3910653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3260290 |
|---|
| End bp | 3262989 |
|---|
| Gene Length | 2700 bp |
|---|
| Protein Length | 899 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637884760 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_486473 |
|---|
| Protein GI | 86749977 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG5309] Exo-beta-1,3-glucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00529842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCCG TCGTCGCTGT TCTGCTGCTG GTCGTTGCCG CTCACGCTGG TCTCTGGGGG
CTGCTCAGGG ACAAACAGAA AGCTCCCGAC TTCACCGGCA TTCTGCCGAG CGTGTCTTAC
GCGCCGTTCG ACGGCTCGGC GCATCCCGAC GTCGACAACA TTCCGAGCGC CGAGCGCATC
CGCAGCGACC TGAAGACGCT GTCGCCGATG ACCCGGGCGA TCCGTCTGTA CTCGTCGACC
GGCGGCGTCG AGCTGGTGCC GCCGATCGCC AACGAGGTCG GCCTGAAAGT CACGGTCGGC
GCCTGGATCG ACAAGTTCAG CGACCGCAAC GAGCGCGAAA TGCAGGCGGC GATCGAGCTC
GCCAAGCGCA ACAGCAACGT CAACGGCATC GTCGTCGGCA ACGAAACGAT CTACCGCGCC
GACCAGAAGG TCGAGGACCT GATCAAACTG ATCCAGCGGG TGAAGAGCCA GGTCAACGTG
CCGGTCACCA CCGGCGAGAT CTGGAACATC TGGATCGAGA ATCCCGAACT GGCGTCCTCG
GTCGACTTCA TCGCCGCCCA CATCCTGCCC TATTGGGAAG GGTTCTCGGA CAAGCAGGCG
GTCGATCAGG CGCTGATCAT CTACCAGAAA CTGCGCGACG CCTTCCCCGG CAAGCGCATC
GTGATCGCCG AATTCGGCTG GCCGAGCGCG GGCTACAATC TCAAATCGGC GATCCCCGGC
CCGTTCGAGC AGGCGGTGAC GCTGCGCAAT TTCGTCAGCC GCGCCGAAGC CATCGGGATG
GAATACAACA TCGTCGAGGC GATCGATCAG CCGTGGAAGT TCTTCGAAGG CGGCGTCGGG
CCGTATTGGG GCATCCTCAA CGCGTCGCGT GAGCCGAAAT TCGCCTGGAC CGGCCCGGTG
GTCGACCCGG CCTATTGGAA GCTCGCCGGC ATCGCGCTGC TGGTCGGCAT TCTGCTGTCG
CTGCCGATTC TGCAGCTCGC CGCCCCCACG GCGATGCAGA CGCTGCTGTT GTCGTCGGCC
GCGCACGGCG TCGGCGCCTG GGTCGCCACG GTGTTCGCCT ATTGGACCGG GCACTACTTC
CTGTTCGGCT CGGCCTTCGC GCTCACGCTC GGCATGATCC TGCTGGTGCC TTTGGTCGCG
ATCGCGCTGG CGCGGATCGA GGAAATCGCC GTCGTCGCGT TCGGCCGCAA GCCGCGGCGG
CTGATCACCC GCGCGATGAC AGACGTCCAG GAGAAGAAGC AGACCGCGGC GCTGGCCAAG
GGCGAACCGG TGCGCTTCCC CAAAGTGTCG ATCCACGTCC CGGCCTATTT CGAACCGCCG
GAGATGCTCA AACAGACGCT CGATGCGGTG GCCAGGCTCG ACTATCCGAA TTTCGAATGC
GTGGTGATCA TCAACAACAC GCCGGACCCG GCCTTCACCC AGCCGATCCA GGACCATTGC
CGCGAGCTCG GCGAGCGCTT CAAATTCATC AACGCCGAGA AAGTCCAGGG CTTCAAGGCC
GGCGCCTTGC GGATCGCGAT GGACCGCACC GCCGCCGATG CCGAGATCAT CGGCATCATC
GACGCCGACT ATGTGGTGAC GCCGGACTGG CTGAAGGATC TGGTGCCGGC GTTCGACGAT
CCCCGGGTCG GCCTGGTCCA GGCCCCGCAG GAGCATCGCG ACGGCGACCG CTCGCTGATG
CACTACATCA TGAACGGCGA ATATGCCGGC TTCTTCGACA TCGGCATGGT CCAGCGCAAC
GAGGTCAACG GCATCATCGT GCACGGCACG ATGTGCCTGA TCCGCCGCGC CGCGATGGAC
ATGGCCGGCG GCTGGTCGAG CGACACGATC TGCGAGGATT CCGACCTCGG CCTCGAGATC
ATGGAGCATG GCTGGCTCAC CCACTACACC AACACCCGCT ACGGCTACGG CCTGCTGCCG
GACACCTACG AGGCGTTCAA GAAGCAGCGC CACCGCTGGG CCTATGGCGG CTTCCAGATC
ATCAAGAAGC ACTGGCGCCG CTTCCTGCCC GGCAACAGCC GCCTCTCCCG CGACCAGCGT
CGCGAATTCG GTCTCGGCTG GCTGAACTGG CTCGGCGCCG AGAGCCTCGG CGTGGTGGTG
GCGATCCTCA ATCTGATCTG GGTGCCGATC GTCGCCTTCG CCGACATCGC CATTCCCGAC
AAGATCCTGA CGTTGCCGAT CATCGCGTCC TTCGTGGTGA CGCTGGCGCA TTTCGTGGTG
CTGTACCGGC TGCGGGTGAA GATCAACGCG CCGCGGATGT TCGGCGCCAT GATCGCGGCG
ATGTCGGTGC AGTGGACGGT GTCCCGCGCG GTGGCGCAGG GCCTGATCAC CGAGCACCTC
GCCTTCGCCC GCACCTCGAA AGGCGGCCTC ACCCTGATGT CGGTCGAATT CCAGGCGTTC
TGGGAGGCCG TGATCGGCGT GCTGCTGCTG ATCGGCGCCG GCGTTCTGAT CGCCTCGAAC
TCCTTCCGCC AGATTCACGA GATCTATATC TTCGCCGGCG TGCTGGTGTT GCAGAGCCTG
CCGTTCCTGG CGGCGGTGGC GATCGCGATC CTGGAGAATT CGCGAATCAA TTCGTTCCAG
TGGTGGACCG ACACCCGAAT CCGTACCGCC GAGCTGATCG GTCTGCGCCC GGTGACGCTG
CCCCCGGCGA TCCCGGCCCG GCAGAAGGTC GCCCAGGAAA TCCACCACGA CGCCGCCTGA
|
|---|
| Protein sequence | MRAVVAVLLL VVAAHAGLWG LLRDKQKAPD FTGILPSVSY APFDGSAHPD VDNIPSAERI
RSDLKTLSPM TRAIRLYSST GGVELVPPIA NEVGLKVTVG AWIDKFSDRN EREMQAAIEL
AKRNSNVNGI VVGNETIYRA DQKVEDLIKL IQRVKSQVNV PVTTGEIWNI WIENPELASS
VDFIAAHILP YWEGFSDKQA VDQALIIYQK LRDAFPGKRI VIAEFGWPSA GYNLKSAIPG
PFEQAVTLRN FVSRAEAIGM EYNIVEAIDQ PWKFFEGGVG PYWGILNASR EPKFAWTGPV
VDPAYWKLAG IALLVGILLS LPILQLAAPT AMQTLLLSSA AHGVGAWVAT VFAYWTGHYF
LFGSAFALTL GMILLVPLVA IALARIEEIA VVAFGRKPRR LITRAMTDVQ EKKQTAALAK
GEPVRFPKVS IHVPAYFEPP EMLKQTLDAV ARLDYPNFEC VVIINNTPDP AFTQPIQDHC
RELGERFKFI NAEKVQGFKA GALRIAMDRT AADAEIIGII DADYVVTPDW LKDLVPAFDD
PRVGLVQAPQ EHRDGDRSLM HYIMNGEYAG FFDIGMVQRN EVNGIIVHGT MCLIRRAAMD
MAGGWSSDTI CEDSDLGLEI MEHGWLTHYT NTRYGYGLLP DTYEAFKKQR HRWAYGGFQI
IKKHWRRFLP GNSRLSRDQR REFGLGWLNW LGAESLGVVV AILNLIWVPI VAFADIAIPD
KILTLPIIAS FVVTLAHFVV LYRLRVKINA PRMFGAMIAA MSVQWTVSRA VAQGLITEHL
AFARTSKGGL TLMSVEFQAF WEAVIGVLLL IGAGVLIASN SFRQIHEIYI FAGVLVLQSL
PFLAAVAIAI LENSRINSFQ WWTDTRIRTA ELIGLRPVTL PPAIPARQKV AQEIHHDAA
|
|---|
| |