| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1850 |
|---|
| Symbol | |
|---|
| ID | 3909009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2116282 |
|---|
| End bp | 2116803 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637883744 |
|---|
| Product | permease |
|---|
| Protein accession | YP_485469 |
|---|
| Protein GI | 86748973 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.478457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000494055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCGC AGCAAGGGCC GACCAACATG AACATGACGC ACTACATGGA ATTGCTGGCG
AACAACCAGC CGTGGAACCT GCTGCTGTTC ATGGCGATCC CGATCGTGCT CGCCGAGACG
ATCGCGGTCA CCGAGCTGTA TCTGCTCTAC ACCCGTAACT ATCACGGTCC GGCGCGGGCC
TTGAACCGGG TCTGCAGCAT CCTGGTCGGG TTCTATTTCG CCGGCGTGTT CGTCTATCTG
CTGACCACCG CCGTGGTGCC GATCACCGCG GACAACGCCT GGCGCGGCAT CGCCGACATC
GTCGCGGTCG GGTTCTACCT GCTCGGCGTC GTGCCGCTGG TCGGGCTGGC GCTGGTCGAT
CTCAACATCA TCGGCAAGAA CCGCGACGCC CACGGCAAGA TGGGGATCCA TGCGAGCTTC
GTCGCGATCT TCCTGATCGT CGGCCACATC GCGATGATCT TCGGCATGAT GGACCCCGCC
GTGCTCGGTG GCGGAATCGC CGGGAACGTT CATCACCACT GA
|
|---|
| Protein sequence | MLAQQGPTNM NMTHYMELLA NNQPWNLLLF MAIPIVLAET IAVTELYLLY TRNYHGPARA
LNRVCSILVG FYFAGVFVYL LTTAVVPITA DNAWRGIADI VAVGFYLLGV VPLVGLALVD
LNIIGKNRDA HGKMGIHASF VAIFLIVGHI AMIFGMMDPA VLGGGIAGNV HHH
|
|---|
| |