| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1754 |
|---|
| Symbol | nirA |
|---|
| ID | 3909741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2007058 |
|---|
| End bp | 2008818 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637883648 |
|---|
| Product | ferredoxin-nitrite reductase |
|---|
| Protein accession | YP_485373 |
|---|
| Protein GI | 86748877 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0155] Sulfite reductase, beta subunit (hemoprotein) |
|---|
| TIGRFAM ID | [TIGR02435] precorrin-3B synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.188302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00588237 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAGCG AATTCACGAT CGACCAGAAG CGATACCTGG AAGGCTTCGC CACCGGCATC
AACGCCGCGC GGGTGCAGCG CGGCGCCCTG CCCGCCGCCG GCAGCGCGCA GCCCTCCGGC
CCCGACGCGA TCCACATCGC CGCGCAGGAT CGCTACACTG CCGCGGGCAA GAAACTCGCC
GAAGCGGAGA AGTGGAAGCG CGAGGAGCAT CCGTTCGACG CCTATGCGCG GCTGAAGCAG
CAGGCCAAGA CAAATACGCC GCCGAAGCCG GCCGACAATT TCCGCTGGCG CTTTTACGGG
CTGTTCTACG TCGCCCCGAC CCAGAGCTCC TATATGTGCC GGTTGCGGAT TCCCAATGGC
GTGCTGACGT CGTGGCAGAT GCAGGGCCTC GCCGACATCG CCGACAATTG TGCCGGCGGC
TATTCCCACG TGACGACGCG CGCCAATCTG CAGATGCGCG AGATCGCGCC GAAGAACGCC
GTGACTCTGA TCGAAGGCAT CGAGTCGCTC GGCCTGTGGG CGCGCGGCGC CGGCGCCGAC
AACATCCGCA ACGTCACCGG TTCGGCCACC GCCGGCATCG ATCCGCAGGA ATTGCTCGAC
ACCCGCGCTT ACGCGCGCGA GTGGCACTTC CACATCCTCA ACGAGCGCGC GCTGTACGGC
CTGCCGCGCA AATTCAACGT CGCCTTCGAC GGTGGCGGGC TGATCCCGAC GCTGGAGGAC
ACCAACGACA TCGCGTTCCA GGCGGTGACG ATCGGCGACG GCCACGGCGT CGAACCGGGC
GTGTGGTTCC GGCTCTCGCT CGGCGGCATC ACCGGCCACA AGGATTTTGC CCGCGACACC
GGCGTGATCG TGCCGCCGGA TGAAGCGACC GAAGTCTCGG ACGCGATCGT GCGGGTGTTC
ATCGAGCACG GCGACCGCAC CGACCGGGCC AGGTCGCGGC TGAAATACGT GCTCGACCGT
TTCGGCTTCG ATGAGTTTCT CAGGCGGGTC GAGGGGCGGC TCGGACGCAA GCTGGTGCGC
GTGCCCGCGG AGGCCGCGCA GCCACGGCCG GCGCAGGATC GCGCCGCGCA TATCGGCGTC
CATCGCCAGA AGCAGGCCGG GCTGAACTGG ATCGGCGTGC GGCTGCCGCT CGGCAAGCTG
ACGAGCGCGC AGATGCGCGG CCTCGCCGAG ATTGCGCACA ATTTCGGCGA CGGCGATATC
CGGCTGACCG TGTGGCAGAA CCTGTTGATC TCCGGCGTTC CGGACGCGCG TGTCGCGGAC
GCAAGTGCGG CGATCGTCGC GCTCGGCCTC GCGATCGACG CCAGTCCGAT CCGCGCCGGA
CTGATCGCCT GCACTGGCGC CACCGGCTGC CGGTTCGGCG CCGCCAAGAC CAAGGAAACC
GCCGAAGCCA TCGCGGGCTA TTGCGAGCCG CGGGTGCCAC TCGACACGCC GGTGAACATC
CACCTCACCG GCTGCCATCA TTCCTGCGCG CAACATTACA TCAGCGACAT CGGCCTGATC
GGCGCCAAGG TGGCGATCTC CGACGAAGAC ACCGTCGAGG GCTTCCACAT CCATGTCGGC
GGTGCGTTCG GCGAAGGCGC CGCGATCGGC GCCGAAGTGC TGCGCGACGT CAGACAGGAC
GACGCGCCGC GTGTCATCGC GCAAATGCTG AGCACGTATC TCGCGCAACG CGCTTCGCCG
GACGAAACCT TCCTCGCCTT CGCGCGCCGC CACGACACCC CGACGCTGCA ACGTCTGTTC
GCTCTGGAGA CCGGTGCATG A
|
|---|
| Protein sequence | MGSEFTIDQK RYLEGFATGI NAARVQRGAL PAAGSAQPSG PDAIHIAAQD RYTAAGKKLA
EAEKWKREEH PFDAYARLKQ QAKTNTPPKP ADNFRWRFYG LFYVAPTQSS YMCRLRIPNG
VLTSWQMQGL ADIADNCAGG YSHVTTRANL QMREIAPKNA VTLIEGIESL GLWARGAGAD
NIRNVTGSAT AGIDPQELLD TRAYAREWHF HILNERALYG LPRKFNVAFD GGGLIPTLED
TNDIAFQAVT IGDGHGVEPG VWFRLSLGGI TGHKDFARDT GVIVPPDEAT EVSDAIVRVF
IEHGDRTDRA RSRLKYVLDR FGFDEFLRRV EGRLGRKLVR VPAEAAQPRP AQDRAAHIGV
HRQKQAGLNW IGVRLPLGKL TSAQMRGLAE IAHNFGDGDI RLTVWQNLLI SGVPDARVAD
ASAAIVALGL AIDASPIRAG LIACTGATGC RFGAAKTKET AEAIAGYCEP RVPLDTPVNI
HLTGCHHSCA QHYISDIGLI GAKVAISDED TVEGFHIHVG GAFGEGAAIG AEVLRDVRQD
DAPRVIAQML STYLAQRASP DETFLAFARR HDTPTLQRLF ALETGA
|
|---|
| |