| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1726 |
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| Symbol | |
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| ID | 3908251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1967570 |
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| End bp | 1969534 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637883620 |
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| Product | squalene cyclase |
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| Protein accession | YP_485345 |
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| Protein GI | 86748849 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00651785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.158685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCCG GTACGACCAT TCTGGGCGCA GAGCGCGGCA GGACGCTCGA CGCCTCGATC
GATGCGGCGC GTGCCGCGCT GCTCGGTTAT CGCCGCGACG ACGGCCATTG GGTGTTCGAG
CTTGAGGCCG ATTGTACCAT TCCGGCCGAA TACGTGCTGC TGCGGCACTA TCTCGGCGAG
CCGGTCGATG CCGCGCTGGA GGCCAAGATC GCGGTCTACC TGCGCCGGAC CCAGGGCGCG
CATGGCGGCT GGCCGCTGGT GCACGACGGC GAGTTCGATG TCAGCGCGAC GGTAAAGGCC
TACTTCGCCC TCAAGATGAT CGGCGACAGC ATCGACGCGC CGCATATGGC CAAGGCCCGC
GAGGCGATCC TGGCGCGCGG CGGCGCGATC CACGTCAACG TGTTCACCCG CTTCCTTCTG
TCGATGTTCG GCATTCTGAC CTGGCGCAGC GTGCCGGTGC TGCCGGTCGA GATCATGCTG
CTGCCGATGT GGGCGCCGTT CCACCTCAAC AAGATCTCCT ATTGGGCGCG CACCACGATC
GTGCCGCTGA TGGTGCTGGC GGCGCTGAAG CCGCGCGCGG TCAACAAGCT CGACATCGGC
CTCGATGAAT TGTTCCTGCA GGACCCGCAA TCGATCGGCA TGCCGGCCAA GGCGCCGCAT
CAGAGCTGGG GCCTGTTCAC GCTGTTCGGT TCGATCGACG CGGTGCTGCG GGTGATCGAG
CCGCTGATCC CGAAAAAGCT GCGCAGTTAT GCGATCGGCC GCGCGGTCGC CTTCATCGAG
GAGCGGCTGA ACGGCGAGGA CGGGCTCGGT GCGATCTATC CGCCGATGGC CAACACGGTG
ATGATGTACA AGGTGCTGGG CTATGGTGAG GACCATCCGC CGCGCGCCAT CACCCGACGC
GGCATCGACC TGCTGCTGGT GGTCGGCGAG GAGGAGGCCT ACTGCCAGCC CTGCGTCTCG
CCGATCTGGG ACACCTCGCT GACCTGCCAC GCGCTGCTGG AGGCGGGCGG CGCCGAGGCC
GCGCTGCCGG TGCGCAAGGG GCTGGACTGG CTGATTCCGA AGCAGGTGCT CGACCTCAAG
GGCGACTGGG CGGTGAAGGC GCCCAACGTC CGCCCCGGGG GCTGGGCGTT CCAGTACAAC
AATGCCCATT ACCCCGATCT GGACGACACC GCCGTGGTGG TTATGGCGCT CGACCGCGCC
CGCCGCGATC AGCCGAGTGC GGCCTACGAC AATGCGATCG CGCGCGGGCG CGAGTGGATC
GAGGGGATGC AGAGCGACGA TGGCGGCTGG GCTGCCTTCG ACGTGAACAA CACCGAGTAT
TATTTGAACA ACATCCCGTT CTCGGATCAC GGCGCGCTGC TCGACCCGCC GACCGAGGAC
GTCACTGCGC GCTGCGTCTC GATGCTGGCG CAGCTCGGCG AGACCGCGGA GACCAGCTCG
GCGCTGGCCC GCGGCGTCGC CTATCTGCGC AAGACCCAAC TCGCCGAAGG CTCGTGGTAC
GGCCGCTGGG GCCTGAATTA CATCTACGGA ACCTGGTCGG TGCTGTGCGC GCTGAATGCG
GCCGGGGTCG CCCATCAGGA TCCGGCGATG CGCAAGGCGG TGGCCTGGCT GGCATCGATC
CAGAATGCCG ATGGCGGCTG GGGCGAGGAT GCGGTCAGCT ATCGCCTGGA CTATCGGGGC
TACGAAAGTG CACCGTCCAC GGCGTCCCAA ACGGCATGGG CCTTGCTTGC CTTGATGGCT
GCCGGGGAAG TCGATCATCC GGCGGTGGCG CGCGGGGTTG AGTACCTAAA AGGCACACAG
ACCGAAAAAG GCGTGTGGGA CGAGCAGCGC TACACCGCTA CAGGCTTTCC GCGGGTGTTT
TATCTGCGGT ACCATGGCTA TTCAAAGTTC TTTCCGCTCT GGGCGCTGGC GCGGTATCGA
AATTTGAGAG CCACGAACAG CAAGGTCGTA GGGGTCGGAA TGTGA
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| Protein sequence | MTSGTTILGA ERGRTLDASI DAARAALLGY RRDDGHWVFE LEADCTIPAE YVLLRHYLGE
PVDAALEAKI AVYLRRTQGA HGGWPLVHDG EFDVSATVKA YFALKMIGDS IDAPHMAKAR
EAILARGGAI HVNVFTRFLL SMFGILTWRS VPVLPVEIML LPMWAPFHLN KISYWARTTI
VPLMVLAALK PRAVNKLDIG LDELFLQDPQ SIGMPAKAPH QSWGLFTLFG SIDAVLRVIE
PLIPKKLRSY AIGRAVAFIE ERLNGEDGLG AIYPPMANTV MMYKVLGYGE DHPPRAITRR
GIDLLLVVGE EEAYCQPCVS PIWDTSLTCH ALLEAGGAEA ALPVRKGLDW LIPKQVLDLK
GDWAVKAPNV RPGGWAFQYN NAHYPDLDDT AVVVMALDRA RRDQPSAAYD NAIARGREWI
EGMQSDDGGW AAFDVNNTEY YLNNIPFSDH GALLDPPTED VTARCVSMLA QLGETAETSS
ALARGVAYLR KTQLAEGSWY GRWGLNYIYG TWSVLCALNA AGVAHQDPAM RKAVAWLASI
QNADGGWGED AVSYRLDYRG YESAPSTASQ TAWALLALMA AGEVDHPAVA RGVEYLKGTQ
TEKGVWDEQR YTATGFPRVF YLRYHGYSKF FPLWALARYR NLRATNSKVV GVGM
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