34 homologs were found in PanDaTox collection
for query gene Rsph17025_3235 on replicon NC_009429
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009429  Rsph17025_3235  hypothetical protein  100 
 
 		 275 aa  550  1e-156  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007494  RSP_3324  LuxR family transcriptional regulator  74.18 
 
 		 314 aa  401  1e-111  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009050  Rsph17029_4049  response regulator receiver protein  73.82 
 
 		 275 aa  400  9.999999999999999e-111  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00251355  normal  1 
 
 
-
 
NC_012791  Vapar_3060  two component transcriptional regulator, LuxR family  44.93 
 
 		 215 aa  51.2  0.00002  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_003296  RS03679  transcription regulator protein  32.14 
 
 		 299 aa  47.8  0.0002  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.0000906887  normal  0.0907157 
 
 
-
 
NC_007794  Saro_3089  LuxR family transcriptional regulator  44.07 
 
 		 416 aa  46.6  0.0004  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B1619  LuxR family transcriptional regulator  43.86 
 
 		 405 aa  46.2  0.0005  Burkholderia sp. 383  Bacteria  hitchhiker  0.00646137  normal  0.376229 
 
 
-
 
NC_007948  Bpro_1379  LuxR family transcriptional regulator  45.9 
 
 		 385 aa  46.2  0.0007  Polaromonas sp. JS666  Bacteria  normal  1  normal  0.366472 
 
 
-
 
NC_009656  PSPA7_3314  putative two-component response regulator  39.39 
 
 		 225 aa  45.8  0.0007  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_3310  regulatory protein, LuxR  35.29 
 
 		 512 aa  45.8  0.0007  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1555  regulatory protein, LuxR  40.68 
 
 		 395 aa  45.8  0.0008  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1539  LuxR family transcriptional regulator  41.38 
 
 		 394 aa  45.8  0.0008  Ralstonia eutropha JMP134  Bacteria  normal  0.183723  n/a   
 
 
-
 
NC_008541  Arth_1234  LuxR family transcriptional regulator  44.64 
 
 		 856 aa  45.1  0.001  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_2762  ATP-dependent transcriptional regulator, MalT- like, LuxR family  39.29 
 
 		 520 aa  44.3  0.002  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A0561  hypothetical protein  38.98 
 
 		 387 aa  43.9  0.003  Ralstonia eutropha JMP134  Bacteria  normal  0.930212  n/a   
 
 
-
 
NC_009719  Plav_0160  response regulator receiver protein  43.33 
 
 		 279 aa  43.9  0.003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  33.33 
 
 		 211 aa  43.9  0.003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_010511  M446_2418  LuxR family transcriptional regulator  42.37 
 
 		 191 aa  43.5  0.004  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.123391 
 
 
-
 
NC_013595  Sros_2488  LuxR family transcriptional regulator  41.07 
 
 		 359 aa  43.1  0.005  Streptosporangium roseum DSM 43021  Bacteria  normal  1  decreased coverage  0.008035 
 
 
-
 
NC_008463  PA14_15290  putative transcriptional regulator  41.07 
 
 		 325 aa  43.1  0.005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0074929  hitchhiker  0.0000000000000265262 
 
 
-
 
NC_007760  Adeh_3447  LuxR family transcriptional regulator  39.71 
 
 		 175 aa  42.7  0.006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_1345  putative transcriptional regulator  41.07 
 
 		 325 aa  42.7  0.006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.795893  n/a   
 
 
-
 
NC_011891  A2cp1_3596  transcriptional regulator, LuxR family  41.27 
 
 		 178 aa  42.7  0.006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.445896  n/a   
 
 
-
 
NC_011145  AnaeK_3528  transcriptional regulator, LuxR family  41.27 
 
 		 178 aa  42.7  0.006  Anaeromyxobacter sp. K  Bacteria  normal  0.993919  n/a   
 
 
-
 
NC_010506  Swoo_4031  ATP-dependent transcription regulator LuxR  33.87 
 
 		 896 aa  42.4  0.007  Shewanella woodyi ATCC 51908  Bacteria  normal  0.924331  normal  0.36139 
 
 
-
 
NC_009675  Anae109_3555  response regulator receiver protein  41.27 
 
 		 176 aa  42.4  0.008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.0548987 
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  38.18 
 
 		 217 aa  42.4  0.008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal  1 
 
 
-
 
NC_008148  Rxyl_0703  two component LuxR family transcriptional regulator  38.33 
 
 		 220 aa  42.4  0.008  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.901141  n/a   
 
 
-
 
NC_008463  PA14_38900  putative two-component response regulator  38.98 
 
 		 225 aa  42.4  0.009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.899747  normal  1 
 
 
-
 
NC_007802  Jann_3545  LuxR family transcriptional regulator  31.37 
 
 		 394 aa  42.4  0.009  Jannaschia sp. CCS1  Bacteria  normal  1  normal  0.851404 
 
 
-
 
NC_012791  Vapar_3222  transcriptional regulator, LuxR family  40.98 
 
 		 385 aa  42.4  0.009  Variovorax paradoxus S110  Bacteria  normal  0.566804  n/a   
 
 
-
 
NC_007510  Bcep18194_A5497  LuxR family transcriptional regulator  38.98 
 
 		 395 aa  42.4  0.009  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  42.37 
 
 		 211 aa  42  0.01  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_009253  Dred_0925  response regulator receiver protein  30.91 
 
 		 119 aa  42  0.01  Desulfotomaculum reducens MI-1  Bacteria  normal  0.592282  n/a   
 
 
-
 
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