Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3222 |
Symbol | |
ID | 7973455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 3400358 |
End bp | 3401515 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644793807 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_002945106 |
Protein GI | 239816196 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.566804 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGCCC CGCAACAGAT TCCCGCCGCC GAGCTGTCGG AGCTGATCGG TGCGATCTAC GACTGCTCCC TCGACCCGCA GCGGTGGGCT GCAACATGCA GAAAGATTGC GCAGCGCTGT GACAGCGCCG GGGGCGGCAT CTGCGTGCAC GACCTGAAGC AGATCCAGAA CGACCAGTTG TACGTCTTCG GCTATGAGCC GGAGTTCCTG CAGAAATTCG GCGCCCGGTA CGCCGAGAGC CCGATGGCCG CGGCGGACGT CCTCTCGAAT GCCGGGGACG TGAGCGCGCT GTCGATGGAG CGTTTCCATC TGCATGACAG CGCTTTCTAC CGCGAGGTGC TGCAGCCACA CGGCGTGCTC GACATCATCT GGTTTCCGGC GCTGCGCACC GGCGGGCGCA TGGCGTCCCT GCACGCGTCG CGCAGCGGCG AGTCGCTGCA CTACCAGCAG AGCGACCTTG CCCTGTTCGA GCTCCTTGCG CCGCATGTCT GCCGCGCTCT GGCGATTTCC GACGCGCTCG ACATCCAGGT GCTCAATTCC GAGGTGCTGA AGAGGACCCT TGACGGGCTG GCGGCCGGCG TGTTCCTCGC GGCGCGCGAC GGCCGCGTCG TCTACATGAA CACTGCGGCC GAGCGGCAGG TCCGCTCGGG CACGGCGATG CGCCTGATCG ACAACCGGTT GTCCCCGGTC CACCCGGCCG CTCGTGCCGC GCTGACGCAG GCGATCCAGG ATTCAGGCCG CGAGGGTGCC GACATGCGCA CCAGGGACCA TGCGATCGGA ATCCCCGGTG GAACCGGCGG GGGCTACGTC GCCACCTTGC TGCCGATTGC CGATGGCCGG CGCGCCGGGG TCCTCGCACC GTTCGCGGCG AGCGTTGCGG TGTTCATCCA GGACCCTGTC CAGGCGCCGC TGATGCCCGG GGAGGCATTC GGACGGCTGC ATGGGCTCAC CGGCGGCGAA CTGCGCGTGC TGATGGCGCT GTCGCAAGGC CTGGGCGGCA TGGAGGCCGC CGGCGTGCTG GGCGTGGGCG AACCGACCAT CCGCACCCAC CTGCAAAGGA TCTACTCCAA GACCGGCACC TCCAGGCAGG GAGACCTGCT GCGCCTGCTG CACCACTCGA CACCCCCGAC GCGGCACCAG ACGCGCCTGG CGGATTGA
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Protein sequence | MTAPQQIPAA ELSELIGAIY DCSLDPQRWA ATCRKIAQRC DSAGGGICVH DLKQIQNDQL YVFGYEPEFL QKFGARYAES PMAAADVLSN AGDVSALSME RFHLHDSAFY REVLQPHGVL DIIWFPALRT GGRMASLHAS RSGESLHYQQ SDLALFELLA PHVCRALAIS DALDIQVLNS EVLKRTLDGL AAGVFLAARD GRVVYMNTAA ERQVRSGTAM RLIDNRLSPV HPAARAALTQ AIQDSGREGA DMRTRDHAIG IPGGTGGGYV ATLLPIADGR RAGVLAPFAA SVAVFIQDPV QAPLMPGEAF GRLHGLTGGE LRVLMALSQG LGGMEAAGVL GVGEPTIRTH LQRIYSKTGT SRQGDLLRLL HHSTPPTRHQ TRLAD
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