Gene Vapar_3222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3222 
Symbol 
ID7973455 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp3400358 
End bp3401515 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content69% 
IMG OID644793807 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_002945106 
Protein GI239816196 
COG category[K] Transcription 
COG ID[COG2771] DNA-binding HTH domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.566804 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGCCC CGCAACAGAT TCCCGCCGCC GAGCTGTCGG AGCTGATCGG TGCGATCTAC 
GACTGCTCCC TCGACCCGCA GCGGTGGGCT GCAACATGCA GAAAGATTGC GCAGCGCTGT
GACAGCGCCG GGGGCGGCAT CTGCGTGCAC GACCTGAAGC AGATCCAGAA CGACCAGTTG
TACGTCTTCG GCTATGAGCC GGAGTTCCTG CAGAAATTCG GCGCCCGGTA CGCCGAGAGC
CCGATGGCCG CGGCGGACGT CCTCTCGAAT GCCGGGGACG TGAGCGCGCT GTCGATGGAG
CGTTTCCATC TGCATGACAG CGCTTTCTAC CGCGAGGTGC TGCAGCCACA CGGCGTGCTC
GACATCATCT GGTTTCCGGC GCTGCGCACC GGCGGGCGCA TGGCGTCCCT GCACGCGTCG
CGCAGCGGCG AGTCGCTGCA CTACCAGCAG AGCGACCTTG CCCTGTTCGA GCTCCTTGCG
CCGCATGTCT GCCGCGCTCT GGCGATTTCC GACGCGCTCG ACATCCAGGT GCTCAATTCC
GAGGTGCTGA AGAGGACCCT TGACGGGCTG GCGGCCGGCG TGTTCCTCGC GGCGCGCGAC
GGCCGCGTCG TCTACATGAA CACTGCGGCC GAGCGGCAGG TCCGCTCGGG CACGGCGATG
CGCCTGATCG ACAACCGGTT GTCCCCGGTC CACCCGGCCG CTCGTGCCGC GCTGACGCAG
GCGATCCAGG ATTCAGGCCG CGAGGGTGCC GACATGCGCA CCAGGGACCA TGCGATCGGA
ATCCCCGGTG GAACCGGCGG GGGCTACGTC GCCACCTTGC TGCCGATTGC CGATGGCCGG
CGCGCCGGGG TCCTCGCACC GTTCGCGGCG AGCGTTGCGG TGTTCATCCA GGACCCTGTC
CAGGCGCCGC TGATGCCCGG GGAGGCATTC GGACGGCTGC ATGGGCTCAC CGGCGGCGAA
CTGCGCGTGC TGATGGCGCT GTCGCAAGGC CTGGGCGGCA TGGAGGCCGC CGGCGTGCTG
GGCGTGGGCG AACCGACCAT CCGCACCCAC CTGCAAAGGA TCTACTCCAA GACCGGCACC
TCCAGGCAGG GAGACCTGCT GCGCCTGCTG CACCACTCGA CACCCCCGAC GCGGCACCAG
ACGCGCCTGG CGGATTGA
 
Protein sequence
MTAPQQIPAA ELSELIGAIY DCSLDPQRWA ATCRKIAQRC DSAGGGICVH DLKQIQNDQL 
YVFGYEPEFL QKFGARYAES PMAAADVLSN AGDVSALSME RFHLHDSAFY REVLQPHGVL
DIIWFPALRT GGRMASLHAS RSGESLHYQQ SDLALFELLA PHVCRALAIS DALDIQVLNS
EVLKRTLDGL AAGVFLAARD GRVVYMNTAA ERQVRSGTAM RLIDNRLSPV HPAARAALTQ
AIQDSGREGA DMRTRDHAIG IPGGTGGGYV ATLLPIADGR RAGVLAPFAA SVAVFIQDPV
QAPLMPGEAF GRLHGLTGGE LRVLMALSQG LGGMEAAGVL GVGEPTIRTH LQRIYSKTGT
SRQGDLLRLL HHSTPPTRHQ TRLAD