297 homologs were found in PanDaTox collection
for query gene Plim_0102 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_014148  Plim_0102  Holliday junction resolvase YqgF  100 
 
 		 199 aa  412  1e-114  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
-
 
NC_008686  Pden_0510  Holliday junction resolvase-like protein  36.11 
 
 		 158 aa  80.1  0.00000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.556579  normal  1 
 
 
-
 
NC_009485  BBta_4721  Holliday junction resolvase-like protein  36.19 
 
 		 161 aa  79.3  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007964  Nham_2279  Holliday junction resolvase-like protein  37.14 
 
 		 168 aa  79.7  0.00000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.273152  n/a   
 
 
-
 
NC_008044  TM1040_0967  Holliday junction resolvase-like protein  34.58 
 
 		 157 aa  79  0.00000000000005  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_1491  Holliday junction resolvase-like protein  29.63 
 
 		 139 aa  77.4  0.0000000000001  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.0000000000748947  n/a   
 
 
-
 
NC_007493  RSP_2684  Holliday junction resolvase-like protein  36.45 
 
 		 160 aa  77  0.0000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.173322  n/a   
 
 
-
 
NC_009767  Rcas_3713  Holliday junction resolvase YqgF  37.74 
 
 		 146 aa  76.6  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0658941  hitchhiker  0.00476179 
 
 
-
 
NC_009049  Rsph17029_1342  Holliday junction resolvase-like protein  36.45 
 
 		 160 aa  77  0.0000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00888056  normal  0.184568 
 
 
-
 
NC_007778  RPB_2429  Holliday junction resolvase-like protein  36.19 
 
 		 160 aa  75.1  0.0000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.0446184 
 
 
-
 
NC_007958  RPD_3023  Holliday junction resolvase-like protein  33.63 
 
 		 160 aa  75.1  0.0000000000006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.438725  normal  0.394583 
 
 
-
 
NC_008009  Acid345_0556  Holliday junction resolvase YqgF  31.06 
 
 		 153 aa  74.7  0.0000000000009  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.901255  normal  0.0480752 
 
 
-
 
NC_007406  Nwi_2004  Holliday junction resolvase-like protein  33.33 
 
 		 163 aa  74.3  0.000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.166059  normal  0.662003 
 
 
-
 
NC_009720  Xaut_3922  Holliday junction resolvase YqgF  34.91 
 
 		 176 aa  74.3  0.000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_3213  Holliday junction resolvase-like protein  38.14 
 
 		 202 aa  74.3  0.000000000001  Frankia sp. CcI3  Bacteria  normal  0.0825611  normal  1 
 
 
-
 
NC_007951  Bxe_A3810  Holliday junction resolvase-like protein  37.5 
 
 		 146 aa  73.9  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_2841  Holliday junction resolvase YqgF  36.73 
 
 		 182 aa  73.6  0.000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.636675  normal  0.911101 
 
 
-
 
NC_010505  Mrad2831_0475  Holliday junction resolvase YqgF  37.72 
 
 		 170 aa  73.2  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.437798  normal  0.0955854 
 
 
-
 
NC_013757  Gobs_3157  Holliday junction resolvase YqgF  30.25 
 
 		 222 aa  73.9  0.000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.588989  n/a   
 
 
-
 
NC_009428  Rsph17025_1879  Holliday junction resolvase-like protein  32.71 
 
 		 160 aa  73.6  0.000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620593  normal  1 
 
 
-
 
NC_010681  Bphyt_0869  Holliday junction resolvase-like protein  37.5 
 
 		 146 aa  73.2  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.0747835 
 
 
-
 
NC_011899  Hore_05800  Holliday junction resolvase YqgF  27.44 
 
 		 140 aa  72.8  0.000000000003  Halothermothrix orenii H 168  Bacteria  normal  0.209228  n/a   
 
 
-
 
NC_013205  Aaci_2024  Holliday junction resolvase YqgF  33.64 
 
 		 144 aa  72.4  0.000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.330713  n/a   
 
 
-
 
NC_009921  Franean1_1695  Holliday junction resolvase-like protein  36.29 
 
 		 188 aa  71.6  0.000000000008  Frankia sp. EAN1pec  Bacteria  normal  0.0458229  normal  0.165399 
 
 
-
 
NC_009675  Anae109_2535  Holliday junction resolvase-like protein  34.55 
 
 		 137 aa  71.2  0.00000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.52249 
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  29.05 
 
 		 151 aa  70.9  0.00000000001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_013223  Dret_1130  Holliday junction resolvase YqgF  36.84 
 
 		 142 aa  70.9  0.00000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_6093  endonuclease involved in recombination-like protein  36.28 
 
 		 163 aa  70.9  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0746227  normal  1 
 
 
-
 
NC_008048  Sala_0925  Holliday junction resolvase YqgF  37.27 
 
 		 152 aa  70.5  0.00000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.233016  normal  1 
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  36.54 
 
 		 151 aa  70.1  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.0635951 
 
 
-
 
NC_009523  RoseRS_3225  Holliday junction resolvase YqgF  28.66 
 
 		 141 aa  69.7  0.00000000003  Roseiflexus sp. RS-1  Bacteria  normal  0.387387  normal  1 
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  35.78 
 
 		 146 aa  69.3  0.00000000003  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_0088  Holliday junction resolvase YqgF  36.63 
 
 		 149 aa  69.7  0.00000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011004  Rpal_3523  Holliday junction resolvase-like protein  36.19 
 
 		 160 aa  68.6  0.00000000005  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00889049  n/a   
 
 
-
 
NC_008346  Swol_0470  Holliday junction resolvase YqgF  33.33 
 
 		 141 aa  68.9  0.00000000005  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.00000000599692  n/a   
 
 
-
 
NC_011661  Dtur_1024  Holliday junction resolvase YqgF  29.51 
 
 		 141 aa  68.6  0.00000000006  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_0620  Holliday junction resolvase-like protein  34.45 
 
 		 143 aa  68.6  0.00000000006  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009074  BURPS668_3111  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  68.2  0.00000000008  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_0755  Holliday junction resolvase-like protein  37.84 
 
 		 149 aa  67.4  0.0000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.302865  normal  0.26532 
 
 
-
 
NC_006348  BMA1996  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  67.8  0.0000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.391575  n/a   
 
 
-
 
NC_007434  BURPS1710b_3169  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  67.8  0.0000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A2747  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  67.8  0.0000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0917  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  67.8  0.0000000001  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1858  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  67.8  0.0000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_3147  Holliday junction resolvase-like protein  37.27 
 
 		 146 aa  67.8  0.0000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  0.822464  n/a   
 
 
-
 
NC_008390  Bamb_0738  Holliday junction resolvase-like protein  37.84 
 
 		 149 aa  67.4  0.0000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.89107  n/a   
 
 
-
 
NC_012856  Rpic12D_0568  Holliday junction resolvase-like protein  34.26 
 
 		 143 aa  67.4  0.0000000001  Ralstonia pickettii 12D  Bacteria  normal  0.619752  normal  1 
 
 
-
 
NC_008820  P9303_17391  endonuclease  35.58 
 
 		 214 aa  67  0.0000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  1 
 
 
-
 
NC_009952  Dshi_1064  Holliday junction resolvase-like protein  31.25 
 
 		 163 aa  66.6  0.0000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.282287  normal  1 
 
 
-
 
NC_011831  Cagg_0094  Holliday junction resolvase YqgF  33.63 
 
 		 142 aa  67  0.0000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0018567  normal  1 
 
 
-
 
NC_010508  Bcenmc03_0836  Holliday junction resolvase-like protein  36.94 
 
 		 149 aa  67  0.0000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  hitchhiker  0.00221177 
 
 
-
 
NC_007651  BTH_I1463  Holliday junction resolvase-like protein  38.18 
 
 		 146 aa  67  0.0000000002  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  34.11 
 
 		 146 aa  66.6  0.0000000002  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008060  Bcen_0383  Holliday junction resolvase-like protein  36.94 
 
 		 149 aa  67  0.0000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008542  Bcen2424_0865  Holliday junction resolvase-like protein  36.94 
 
 		 149 aa  67  0.0000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_2408  Holliday junction resolvase-like protein  36.72 
 
 		 156 aa  66.6  0.0000000002  Nocardioides sp. JS614  Bacteria  normal  0.332292  n/a   
 
 
-
 
NC_011894  Mnod_3314  Holliday junction resolvase YqgF  33.91 
 
 		 163 aa  67  0.0000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_4344  Holliday junction resolvase YqgF  34.78 
 
 		 168 aa  66.2  0.0000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.892789  normal  0.367855 
 
 
-
 
NC_009524  PsycPRwf_0143  Holliday junction resolvase YqgF  29.1 
 
 		 177 aa  66.6  0.0000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_A3963  Holliday junction resolvase-like protein  36.04 
 
 		 149 aa  66.2  0.0000000003  Burkholderia sp. 383  Bacteria  normal  1  normal  0.539384 
 
 
-
 
NC_013172  Bfae_16350  conserved hypothetical protein TIGR00250  36.3 
 
 		 181 aa  66.2  0.0000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_011126  HY04AAS1_0205  Holliday junction resolvase YqgF  31.68 
 
 		 123 aa  66.2  0.0000000003  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010001  Cphy_2297  Holliday junction resolvase YqgF  34.55 
 
 		 150 aa  65.9  0.0000000003  Clostridium phytofermentans ISDg  Bacteria  normal  0.470334  n/a   
 
 
-
 
NC_007802  Jann_2181  Holliday junction resolvase YqgF  34.95 
 
 		 145 aa  65.5  0.0000000004  Jannaschia sp. CCS1  Bacteria  normal  0.659798  normal  1 
 
 
-
 
NC_012850  Rleg_1714  Holliday junction resolvase-like protein  30.91 
 
 		 164 aa  65.5  0.0000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.396791 
 
 
-
 
NC_011989  Avi_1768  Holliday junction resolvase-like protein  32.99 
 
 		 158 aa  65.5  0.0000000005  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3877  Holliday junction resolvase YqgF  36.97 
 
 		 151 aa  65.5  0.0000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.843962  normal  1 
 
 
-
 
NC_007520  Tcr_1828  Holliday junction resolvase YqgF  33.33 
 
 		 134 aa  65.1  0.0000000006  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  35 
 
 		 149 aa  65.1  0.0000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.159244 
 
 
-
 
NC_009511  Swit_0601  Holliday junction resolvase YqgF  36.45 
 
 		 151 aa  65.1  0.0000000007  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.613999 
 
 
-
 
NC_009668  Oant_3664  Holliday junction resolvase-like protein  31.68 
 
 		 165 aa  64.7  0.0000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_3074  Holliday junction resolvase YqgF  33.86 
 
 		 161 aa  64.7  0.0000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.459764 
 
 
-
 
NC_013173  Dbac_1790  Holliday junction resolvase YqgF  34.26 
 
 		 133 aa  64.7  0.0000000008  Desulfomicrobium baculatum DSM 4028  Bacteria  decreased coverage  0.00751815  n/a   
 
 
-
 
NC_008726  Mvan_2641  Holliday junction resolvase YqgF  33.9 
 
 		 175 aa  64.7  0.0000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011369  Rleg2_1518  Holliday junction resolvase-like protein  30.91 
 
 		 163 aa  64.7  0.0000000009  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.793177 
 
 
-
 
NC_010581  Bind_1895  Holliday junction resolvase-like protein  33.33 
 
 		 165 aa  64.7  0.0000000009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.273411  normal  1 
 
 
-
 
NC_004311  BRA0597  Holliday junction resolvase-like protein  31.63 
 
 		 162 aa  64.3  0.000000001  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_011761  AFE_3061  hypothetical protein  35.78 
 
 		 143 aa  64.3  0.000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_007335  PMN2A_0199  Holliday junction resolvase YqgF  33.33 
 
 		 144 aa  64.3  0.000000001  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.102311  n/a   
 
 
-
 
NC_011206  Lferr_2668  Holliday junction resolvase YqgF  35.78 
 
 		 143 aa  64.3  0.000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.933138  normal  1 
 
 
-
 
NC_011884  Cyan7425_2514  Holliday junction resolvase-like protein  31.4 
 
 		 150 aa  63.5  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.36708  normal  1 
 
 
-
 
NC_007794  Saro_0906  Holliday junction resolvase-like protein  34.75 
 
 		 155 aa  63.5  0.000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.167999  n/a   
 
 
-
 
NC_007925  RPC_2255  Holliday junction resolvase-like protein  30.48 
 
 		 163 aa  63.5  0.000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.86844  normal  0.55099 
 
 
-
 
NC_008254  Meso_1361  Holliday junction resolvase YqgF  35 
 
 		 160 aa  63.9  0.000000002  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_014248  Aazo_4148  Holliday junction resolvase YqgF  39.22 
 
 		 158 aa  63.5  0.000000002  'Nostoc azollae' 0708  Bacteria  normal  0.927535  n/a   
 
 
-
 
NC_009636  Smed_0941  Holliday junction resolvase-like protein  29.13 
 
 		 165 aa  62.8  0.000000003  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.22726 
 
 
-
 
NC_011025  MARTH_orf203  putative Holliday junction resolvase  28 
 
 		 147 aa  62.8  0.000000003  Mycoplasma arthritidis 158L3-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009504  BOV_A0563  Holliday junction resolvase-like protein  30.61 
 
 		 162 aa  62.8  0.000000003  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_008819  NATL1_08311  endonuclease  32.38 
 
 		 144 aa  62.8  0.000000003  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.0380749  normal  0.23212 
 
 
-
 
NC_011666  Msil_0742  Holliday junction resolvase-like protein  31.31 
 
 		 161 aa  62.8  0.000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0120989 
 
 
-
 
NC_007643  Rru_A3178  Holliday junction resolvase YqgF  32.65 
 
 		 161 aa  62.4  0.000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.825708  n/a   
 
 
-
 
NC_007799  ECH_0460  hypothetical protein  30.3 
 
 		 156 aa  62.4  0.000000004  Ehrlichia chaffeensis str. Arkansas  Bacteria  normal  1  n/a   
 
 
-
 
NC_013165  Shel_07810  conserved hypothetical protein TIGR00250  30.36 
 
 		 138 aa  62  0.000000006  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  0.0182311 
 
 
-
 
NC_003295  RSc0676  Holliday junction resolvase-like protein  33.33 
 
 		 144 aa  61.6  0.000000007  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008783  BARBAKC583_0838  hypothetical protein  31.31 
 
 		 161 aa  61.6  0.000000007  Bartonella bacilliformis KC583  Bacteria  normal  0.115372  n/a   
 
 
-
 
NC_013422  Hneap_1355  Holliday junction resolvase YqgF  35.19 
 
 		 165 aa  61.2  0.000000009  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_007413  Ava_3804  Holliday junction resolvase-like protein  35.09 
 
 		 151 aa  61.2  0.000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0796335  normal  1 
 
 
-
 
NC_007760  Adeh_1232  Holliday junction resolvase-like protein  34.55 
 
 		 137 aa  61.2  0.000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009338  Mflv_3762  Holliday junction resolvase YqgF  31.93 
 
 		 175 aa  61.2  0.00000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  0.454353 
 
 
-
 
NC_010725  Mpop_3519  Holliday junction resolvase YqgF  34.21 
 
 		 165 aa  60.8  0.00000001  Methylobacterium populi BJ001  Bacteria  normal  0.432695  normal  1 
 
 
-
 
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