More than 300 homologs were found in PanDaTox collection
for query gene Rpic_0620 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010682  Rpic_0620  Holliday junction resolvase-like protein  100 
 
 		 143 aa  291  2e-78  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_0568  Holliday junction resolvase-like protein  93.01 
 
 		 143 aa  275  2e-73  Ralstonia pickettii 12D  Bacteria  normal  0.619752  normal  1 
 
 
-
 
NC_003295  RSc0676  Holliday junction resolvase-like protein  88.19 
 
 		 144 aa  238  2e-62  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A0706  Holliday junction resolvase-like protein  64.62 
 
 		 141 aa  170  6.999999999999999e-42  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_2742  Holliday junction resolvase-like protein  62.69 
 
 		 149 aa  167  3e-41  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010084  Bmul_2523  Holliday junction resolvase-like protein  59.56 
 
 		 149 aa  163  5.9999999999999996e-40  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.159244 
 
 
-
 
NC_007951  Bxe_A3810  Holliday junction resolvase-like protein  58.46 
 
 		 146 aa  163  6.9999999999999995e-40  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010681  Bphyt_0869  Holliday junction resolvase-like protein  59.23 
 
 		 146 aa  160  4.0000000000000004e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.0747835 
 
 
-
 
NC_008060  Bcen_0383  Holliday junction resolvase-like protein  58.82 
 
 		 149 aa  160  6e-39  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_010508  Bcenmc03_0836  Holliday junction resolvase-like protein  58.82 
 
 		 149 aa  160  6e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.311364  hitchhiker  0.00221177 
 
 
-
 
NC_008542  Bcen2424_0865  Holliday junction resolvase-like protein  58.82 
 
 		 149 aa  160  6e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_0755  Holliday junction resolvase-like protein  58.09 
 
 		 149 aa  159  1e-38  Burkholderia ambifaria MC40-6  Bacteria  normal  0.302865  normal  0.26532 
 
 
-
 
NC_008390  Bamb_0738  Holliday junction resolvase-like protein  58.09 
 
 		 149 aa  159  1e-38  Burkholderia ambifaria AMMD  Bacteria  normal  0.89107  n/a   
 
 
-
 
NC_007510  Bcep18194_A3963  Holliday junction resolvase-like protein  58.09 
 
 		 149 aa  157  3e-38  Burkholderia sp. 383  Bacteria  normal  1  normal  0.539384 
 
 
-
 
NC_010622  Bphy_2326  Holliday junction resolvase-like protein  57.69 
 
 		 151 aa  155  2e-37  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.0635951 
 
 
-
 
NC_007651  BTH_I1463  Holliday junction resolvase-like protein  54.41 
 
 		 146 aa  155  2e-37  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_006348  BMA1996  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia mallei ATCC 23344  Bacteria  normal  0.391575  n/a   
 
 
-
 
NC_007434  BURPS1710b_3169  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0917  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_3111  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1858  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_3147  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia pseudomallei 1106a  Bacteria  normal  0.822464  n/a   
 
 
-
 
NC_008836  BMA10229_A2747  Holliday junction resolvase-like protein  53.68 
 
 		 146 aa  152  1e-36  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_010531  Pnec_0265  Holliday junction resolvase-like protein  47.06 
 
 		 147 aa  132  1.9999999999999998e-30  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009379  Pnuc_0244  Holliday junction resolvase-like protein  46.92 
 
 		 138 aa  132  1.9999999999999998e-30  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.535412  n/a   
 
 
-
 
NC_007298  Daro_3892  Holliday junction resolvase-like protein  47.37 
 
 		 146 aa  122  2e-27  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A2479  Holliday junction resolvase-like protein  44.29 
 
 		 151 aa  118  1.9999999999999998e-26  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A0706  Holliday junction resolvase-like protein  49.65 
 
 		 136 aa  117  7e-26  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011662  Tmz1t_3696  Holliday junction resolvase-like protein  46.41 
 
 		 168 aa  113  1.0000000000000001e-24  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_0348  Holliday junction resolvase YqgF  42.03 
 
 		 144 aa  111  4.0000000000000004e-24  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.180305  normal  1 
 
 
-
 
NC_007947  Mfla_2100  Holliday junction resolvase-like protein  43.92 
 
 		 146 aa  110  9e-24  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007520  Tcr_1828  Holliday junction resolvase YqgF  41.86 
 
 		 134 aa  109  1.0000000000000001e-23  Thiomicrospira crunogena XCL-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_013422  Hneap_1355  Holliday junction resolvase YqgF  43.75 
 
 		 165 aa  105  2e-22  Halothiobacillus neapolitanus c2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_3961  Holliday junction resolvase-like protein  50.45 
 
 		 149 aa  105  2e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000281668 
 
 
-
 
NC_013889  TK90_2407  Holliday junction resolvase YqgF  44.96 
 
 		 130 aa  103  6e-22  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.664688  normal  0.90932 
 
 
-
 
NC_007908  Rfer_1378  Holliday junction resolvase-like protein  44.3 
 
 		 156 aa  103  7e-22  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_0834  Holliday junction resolvase-like protein  42.22 
 
 		 140 aa  102  1e-21  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_010465  YPK_0836  Holliday junction resolvase-like protein  42.22 
 
 		 140 aa  102  1e-21  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0695104  n/a   
 
 
-
 
NC_007963  Csal_0059  Holliday junction resolvase-like protein  46.92 
 
 		 148 aa  103  1e-21  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010159  YpAngola_A3340  Holliday junction resolvase-like protein  42.22 
 
 		 140 aa  102  1e-21  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_3638  Holliday junction resolvase-like protein  38.06 
 
 		 142 aa  102  2e-21  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_4616  Holliday junction resolvase-like protein  47.15 
 
 		 153 aa  101  4e-21  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_011080  SNSL254_A3344  Holliday junction resolvase-like protein  38.24 
 
 		 138 aa  100  9e-21  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.130119  normal  0.247443 
 
 
-
 
NC_007484  Noc_0367  Holliday junction resolvase YqgF  37.41 
 
 		 152 aa  100  1e-20  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_0908  Holliday junction resolvase-like protein  46.4 
 
 		 150 aa  98.6  2e-20  Acidovorax citrulli AAC00-1  Bacteria  normal  0.421981  normal  0.397145 
 
 
-
 
NC_007404  Tbd_2580  Holliday junction resolvase-like protein  42.22 
 
 		 145 aa  99.4  2e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.0863234 
 
 
-
 
NC_009436  Ent638_3353  Holliday junction resolvase-like protein  38.24 
 
 		 138 aa  99  2e-20  Enterobacter sp. 638  Bacteria  normal  0.2584  decreased coverage  0.0020385 
 
 
-
 
NC_010002  Daci_1579  Holliday junction resolvase-like protein  44.72 
 
 		 152 aa  99  2e-20  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.657054 
 
 
-
 
NC_011992  Dtpsy_2895  Holliday junction resolvase-like protein  48.15 
 
 		 139 aa  97.8  4e-20  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_3572  Holliday junction resolvase-like protein  48.15 
 
 		 139 aa  98.2  4e-20  Acidovorax sp. JS42  Bacteria  normal  1  normal  0.417353 
 
 
-
 
NC_011149  SeAg_B3260  Holliday junction resolvase-like protein  38.35 
 
 		 138 aa  97.4  5e-20  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.254908  n/a   
 
 
-
 
NC_011094  SeSA_A3271  Holliday junction resolvase-like protein  38.35 
 
 		 138 aa  97.4  5e-20  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  0.0744312 
 
 
-
 
NC_011083  SeHA_C3336  Holliday junction resolvase-like protein  38.35 
 
 		 138 aa  97.4  5e-20  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  0.392173 
 
 
-
 
NC_008786  Veis_1516  Holliday junction resolvase-like protein  47.97 
 
 		 161 aa  97.4  6e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.967902  normal  1 
 
 
-
 
NC_011205  SeD_A3440  Holliday junction resolvase-like protein  38.35 
 
 		 138 aa  97.4  6e-20  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  hitchhiker  0.00956364 
 
 
-
 
NC_011353  ECH74115_4252  Holliday junction resolvase-like protein  37.5 
 
 		 138 aa  97.1  7e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.367892  normal  0.370097 
 
 
-
 
CP001509  ECD_02779  Holliday junction resolvase-like protein  37.23 
 
 		 138 aa  96.7  9e-20  Escherichia coli BL21(DE3)  Bacteria  normal  0.358182  n/a   
 
 
-
 
NC_010498  EcSMS35_3091  Holliday junction resolvase-like protein  37.5 
 
 		 138 aa  96.7  9e-20  Escherichia coli SMS-3-5  Bacteria  normal  0.372008  decreased coverage  0.00000514809 
 
 
-
 
NC_009801  EcE24377A_3292  Holliday junction resolvase-like protein  37.5 
 
 		 138 aa  96.7  9e-20  Escherichia coli E24377A  Bacteria  normal  0.684819  n/a   
 
 
-
 
NC_010658  SbBS512_E3381  Holliday junction resolvase-like protein  37.5 
 
 		 138 aa  96.7  9e-20  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_02742  hypothetical protein  37.23 
 
 		 138 aa  96.7  9e-20  Escherichia coli BL21  Bacteria  normal  0.395069  n/a   
 
 
-
 
CP001637  EcDH1_0746  Holliday junction resolvase YqgF  37.5 
 
 		 138 aa  96.7  1e-19  Escherichia coli DH1  Bacteria  normal  0.61838  n/a   
 
 
-
 
NC_010468  EcolC_0765  Holliday junction resolvase-like protein  37.5 
 
 		 138 aa  96.7  1e-19  Escherichia coli ATCC 8739  Bacteria  normal  0.809741  hitchhiker  0.0000191582 
 
 
-
 
NC_009800  EcHS_A3107  Holliday junction resolvase-like protein  37.5 
 
 		 138 aa  96.7  1e-19  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_3911  Holliday junction resolvase-like protein  38.24 
 
 		 139 aa  94.7  3e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0877728  n/a   
 
 
-
 
NC_008781  Pnap_3347  Holliday junction resolvase-like protein  48.78 
 
 		 156 aa  95.1  3e-19  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0372262  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0540  Holliday junction resolvase YqgF  35.34 
 
 		 156 aa  92  2e-18  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012917  PC1_3713  Holliday junction resolvase-like protein  36.76 
 
 		 139 aa  92  2e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0641904  n/a   
 
 
-
 
NC_008789  Hhal_0939  Holliday junction resolvase YqgF  44.34 
 
 		 142 aa  92.8  2e-18  Halorhodospira halophila SL1  Bacteria  normal  0.193573  n/a   
 
 
-
 
NC_003910  CPS_1251  Holliday junction resolvase-like protein  34.33 
 
 		 148 aa  91.7  3e-18  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_0500  Holliday junction resolvase-like protein  35.51 
 
 		 143 aa  91.3  4e-18  Dickeya zeae Ech1591  Bacteria  normal  0.23587  n/a   
 
 
-
 
NC_010577  XfasM23_1360  Holliday junction resolvase-like protein  40 
 
 		 155 aa  91.3  4e-18  Xylella fastidiosa M23  Bacteria  normal  1  n/a   
 
 
-
 
NC_010513  Xfasm12_1427  Holliday junction resolvase-like protein  40 
 
 		 155 aa  89.7  1e-17  Xylella fastidiosa M12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_2194  Holliday junction resolvase-like protein  37.69 
 
 		 141 aa  88.2  3e-17  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.401443  n/a   
 
 
-
 
NC_010501  PputW619_0468  Holliday junction resolvase-like protein  37.31 
 
 		 141 aa  88.2  3e-17  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_4996  Holliday junction resolvase-like protein  36.57 
 
 		 141 aa  87.8  4e-17  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010117  COXBURSA331_A2220  Holliday junction resolvase-like protein  37.69 
 
 		 141 aa  87.8  4e-17  Coxiella burnetii RSA 331  Bacteria  hitchhiker  0.0000000031992  n/a   
 
 
-
 
NC_010322  PputGB1_5046  Holliday junction resolvase-like protein  36.57 
 
 		 141 aa  87.8  4e-17  Pseudomonas putida GB-1  Bacteria  normal  0.433304  normal  1 
 
 
-
 
NC_009512  Pput_4870  Holliday junction resolvase-like protein  36.57 
 
 		 141 aa  87.8  4e-17  Pseudomonas putida F1  Bacteria  normal  1  normal  0.0143218 
 
 
-
 
NC_007948  Bpro_1143  Holliday junction resolvase-like protein  43.09 
 
 		 138 aa  87.8  5e-17  Polaromonas sp. JS666  Bacteria  normal  0.283517  normal  1 
 
 
-
 
NC_009832  Spro_4028  Holliday junction resolvase-like protein  35.82 
 
 		 140 aa  87.4  6e-17  Serratia proteamaculans 568  Bacteria  normal  0.290268  hitchhiker  0.00115108 
 
 
-
 
NC_012880  Dd703_0543  Holliday junction resolvase-like protein  33.81 
 
 		 139 aa  87  7e-17  Dickeya dadantii Ech703  Bacteria  normal  0.0491649  n/a   
 
 
-
 
NC_011901  Tgr7_2911  Holliday junction resolvase YqgF  40.58 
 
 		 163 aa  86.7  9e-17  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.816073  n/a   
 
 
-
 
NC_007492  Pfl01_5312  Holliday junction resolvase-like protein  35.82 
 
 		 145 aa  86.3  1e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0190801  normal  0.217295 
 
 
-
 
NC_007954  Sden_2673  Holliday junction resolvase-like protein  35 
 
 		 141 aa  86.3  1e-16  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000201914  n/a   
 
 
-
 
NC_008309  HS_0010  Holliday junction resolvase-like protein  34.07 
 
 		 141 aa  86.7  1e-16  Haemophilus somnus 129PT  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_5038  hypothetical protein  35.82 
 
 		 146 aa  85.5  2e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_0484  Holliday junction resolvase-like protein  35.82 
 
 		 146 aa  85.5  2e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008321  Shewmr4_1198  Holliday junction resolvase-like protein  33.57 
 
 		 141 aa  85.5  2e-16  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000276178  normal  1 
 
 
-
 
NC_008322  Shewmr7_1269  Holliday junction resolvase-like protein  33.57 
 
 		 141 aa  85.5  2e-16  Shewanella sp. MR-7  Bacteria  hitchhiker  0.000329275  normal  1 
 
 
-
 
NC_008345  Sfri_2849  Holliday junction resolvase-like protein  34.29 
 
 		 139 aa  85.5  2e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1199  Holliday junction resolvase-like protein  33.57 
 
 		 141 aa  85.5  2e-16  Shewanella sp. ANA-3  Bacteria  normal  0.0107111  normal  0.529497 
 
 
-
 
NC_002977  MCA2335  hypothetical protein  37.32 
 
 		 151 aa  85.1  3e-16  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_3347  Holliday junction resolvase-like protein  33.57 
 
 		 141 aa  85.1  3e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1336  Holliday junction resolvase-like protein  35.82 
 
 		 139 aa  85.1  3e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  0.164432  hitchhiker  0.000378103 
 
 
-
 
NC_009901  Spea_1131  Holliday junction resolvase-like protein  36.03 
 
 		 141 aa  85.1  3e-16  Shewanella pealeana ATCC 700345  Bacteria  normal  0.111461  n/a   
 
 
-
 
NC_009831  Ssed_1236  Holliday junction resolvase-like protein  35.61 
 
 		 139 aa  84.7  4e-16  Shewanella sediminis HAW-EB3  Bacteria  normal  0.578906  normal  0.405452 
 
 
-
 
NC_008700  Sama_2473  Holliday junction resolvase-like protein  32.35 
 
 		 139 aa  84  7e-16  Shewanella amazonensis SB2B  Bacteria  normal  0.641283  normal  1 
 
 
-
 
NC_010717  PXO_02001  Holliday junction resolvase-like protein  40.91 
 
 		 155 aa  83.2  0.000000000000001  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_0941  Holliday junction resolvase-like protein  44.17 
 
 		 164 aa  83.2  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.729807  normal  0.461876 
 
 
-
 
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