22 homologs were found in PanDaTox collection
for query gene PC1_0372 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_0372  putative PAS/PAC sensor protein  100 
 
 		 221 aa  463  9.999999999999999e-131  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
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NC_013421  Pecwa_0423  transcriptional regulator, LuxR family  94.12 
 
 		 221 aa  441  1e-123  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
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NC_012917  PC1_0371  transcriptional regulator, LuxR family  27.65 
 
 		 227 aa  82.4  0.000000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.936  n/a   
 
 
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NC_013421  Pecwa_0422  transcriptional regulator, LuxR family  27.31 
 
 		 227 aa  81.6  0.000000000000008  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
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NC_012912  Dd1591_0414  transcriptional regulator, LuxR family  28.08 
 
 		 222 aa  70.9  0.00000000002  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
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NC_009832  Spro_4193  LuxR family transcriptional regulator  26.87 
 
 		 229 aa  68.2  0.00000000009  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
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NC_012912  Dd1591_3280  transcriptional regulator, LuxR family  28.71 
 
 		 229 aa  67  0.0000000002  Dickeya zeae Ech1591  Bacteria  normal  0.158452  n/a   
 
 
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NC_012880  Dd703_3202  transcriptional regulator, LuxR family  25.25 
 
 		 229 aa  65.1  0.0000000009  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
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NC_008463  PA14_46850  putative transcriptional regulator  25.35 
 
 		 230 aa  57  0.0000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  hitchhiker  0.000000531033 
 
 
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NC_009656  PSPA7_4037  putative transcriptional regulator  21.86 
 
 		 230 aa  53.9  0.000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.586307  n/a   
 
 
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NC_013421  Pecwa_1045  transcriptional regulator, LuxR family  23.76 
 
 		 229 aa  52.4  0.000005  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
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NC_012917  PC1_0816  transcriptional regulator, LuxR family  24.4 
 
 		 229 aa  51.6  0.00001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
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NC_009456  VC0395_0164  LuxR family transcriptional regulator  23.08 
 
 		 246 aa  47.4  0.0002  Vibrio cholerae O395  Bacteria  normal  0.0153554  n/a   
 
 
-
 
NC_011071  Smal_0258  two component transcriptional regulator, LuxR family  36.51 
 
 		 200 aa  45.8  0.0005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
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NC_009675  Anae109_3555  response regulator receiver protein  31.88 
 
 		 176 aa  44.3  0.002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  0.0548987 
 
 
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NC_010506  Swoo_0228  LuxR family transcriptional regulator  32.31 
 
 		 238 aa  42.7  0.004  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
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NC_013223  Dret_0229  PAS/PAC sensor signal transduction histidine kinase  31.07 
 
 		 701 aa  42.7  0.005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  0.282736 
 
 
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NC_009621  Smed_5113  diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)  29.17 
 
 		 1071 aa  42  0.007  Sinorhizobium medicae WSM419  Bacteria  normal  1  decreased coverage  0.00592248 
 
 
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NC_007760  Adeh_3447  LuxR family transcriptional regulator  32.43 
 
 		 175 aa  41.6  0.008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
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NC_011891  A2cp1_3596  transcriptional regulator, LuxR family  32.79 
 
 		 178 aa  41.6  0.009  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.445896  n/a   
 
 
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NC_011145  AnaeK_3528  transcriptional regulator, LuxR family  32.79 
 
 		 178 aa  41.6  0.009  Anaeromyxobacter sp. K  Bacteria  normal  0.993919  n/a   
 
 
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NC_007404  Tbd_1290  two component LuxR family transcriptional regulator  29.69 
 
 		 209 aa  41.6  0.01  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.542915  normal  1 
 
 
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