| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0229 |
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| Symbol | |
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| ID | 8418033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 287642 |
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| End bp | 289747 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036794 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003197109 |
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| Protein GI | 258404367 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.282736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAGCT GGCGCTGGCC CTTTGGCCGC CTGCGTTTCC GGAGCAAACT CGGGTGGGGG
ATGGCCGCGA TTGTTCTTGT CTTTGGCTTG CTCCTGGGGC ACCTGCTCAC GGACATGGCC
GCGCATTCCC TTCTTGAGCA GCACCACAAA CTCGGCGAGA CCGTGGCTCG CAATCTGGCG
CGACGGGCGG CGGAACCCCT GCTGGCTACG GATCTGCTCC GGCTGGAGAA TATGGTGGAT
GAAGTCACCG CCCGCACAGA AAACGCTGAG TATGCCTTTG TCGTTGACGC GGCGCACCAG
GTTTTGGCCC ATTCCTTTGA GCGCGGGTTT CCGGTTGAGC TTATTGCAGC CAATATGCCT
GAGGACAACC GCAGTCACCG TCAATTGTTG CGCAGTCAAC CCGGTTTGAT TGACGATTTT
GCCGCGCCGG TGCTTATCGA GGGTGACCGG ATCGGGTGGG TCAGGGTGGG GGTCTCCCGG
GGGGCGGTGT CCAAGACCTA TACCCGGTTG TGGATGGTCG GGCTGGGACT GACCCTTGCA
GCCATTGCCT TCGGACTGGT CCTGGTCTCC CTTTTTGCCC GAACCGTTGC CCGCCGCCTG
GCCCGGCTTC GTGATTGTGC CGAAGAAATC GTTAAAGGGA ATCTGGACGT TGTCAGCTCT
GAGGACAATC GGGTCAATTG TTGGGAAATC ATGGATTGCC AGATGGGCAA TTGCCCGGCG
TATGGGGAGA AACGGCTGCG TTGCTGGTAT CAGGCTGGTA CCCTGTGCCC CCAATGCGGT
CCGGGCGGCT ACCCCGACAA ACTTTCGTCT TGCCGCCATT GCCCGGTTTA CCGACGCTGT
GCCGGGGACG AACTCCAGGA ATTGGCCGAG GCCTTCGATG TCATGGCCGC CACGTTGAAG
GATTATTTGG GGCAGATCCA GACGGCGCGC CAGGATATGG CCCGGCAGCG GCAGTTGCTG
CGCACCATCC TCGACGTTAC CCCGGATCTG GTCAGTCTGC AGGACGTGAA TCTGGTGTAC
CAGGCCGCAA ACAAAGCGTT TTGCAAGTAT TTCAATCTCG AAGAAAAAGA CATTGTCGGC
CGGACCGATT TTGATATTTT TTCCGAAGCC CAGGCCGACC AGAACTACCA TGAAGACAAG
CAGATTCTGG TCACTGGAGA GGCGCTGTCC AAAGAGATCG CCGTGGCCGG AGAGCGCAAC
CGGCGCTGGT TCCATATTCT CAAAGTACCG GTGTACGACA GGGATCGGAT TACGGGTCTG
CTTCTCACAG CCCGGGACAT CACCGTGGTC AAGCAATACC AGGAACAACT CGTACATTCG
CAAAAAATGG AGGATCTCGG GCGGTTGGCC GGAGGGATCG CTCATGAGAT CAATACCCCT
CTGGGCATCA TCCTGGGGTA TACGCAGCTT TTGCTCGAAG ATTTCGAGGA AGGGACCCAG
AGTCGTACCG ATCTGGAAAC CATTGAGAAG CAGGCCCGGA TCTGCCGCAA GCTGGTGGCT
GATCTGCTCG GTTTTTCCCG GCAGTCGGGA TTTACCCGGG CGGAGATGGA ACTCAACGAT
TCCATTCGGG AAGTCATTTC CCTGGTCGAA CACACCTTCA GTCTGAATAA AGTCTGGATT
CGCAGTGACT TCGACGCCAA TATCCCGCCC ATCGAAGCGG ATAAGGAGCG TTTGAAACAG
GTGTGGATGA ATCTGTTCAA CAACGCCTTT GACGCCATAG GCGAGGACGG GTTTATCTTT
GTGCGCACCA AATTGTGCGC CCACAGGCGC CGGGTCGTGG TCACCGTGGC CGATACCGGT
CCCGGTATCG GGGAGGATGA TCTGGACAAG ATTTTCGATC CCTTTTTCAG TACCAAACCG
GTGGGCAAGG GAACCGGTCT GGGGCTCTCG GTGACCTTTG GGATCATCAA GGACCATGGC
GGGCGGATCA ATGCCTTGAG TCCGGCGCCC AACGAATACA TGCCCTCGGA AATGGAAGAG
CAGATTCAAA TCGGCGCTGG CACGGTGTTT ATTATCGAAT TGCCGGTGGT CGATGACGTC
TTGCCCGAAG ATGAATGCGA GGAGGCCACC CGTCATGTGG TGCGCAGCGA ACAGAGCTCT
GCATGA
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| Protein sequence | MLSWRWPFGR LRFRSKLGWG MAAIVLVFGL LLGHLLTDMA AHSLLEQHHK LGETVARNLA
RRAAEPLLAT DLLRLENMVD EVTARTENAE YAFVVDAAHQ VLAHSFERGF PVELIAANMP
EDNRSHRQLL RSQPGLIDDF AAPVLIEGDR IGWVRVGVSR GAVSKTYTRL WMVGLGLTLA
AIAFGLVLVS LFARTVARRL ARLRDCAEEI VKGNLDVVSS EDNRVNCWEI MDCQMGNCPA
YGEKRLRCWY QAGTLCPQCG PGGYPDKLSS CRHCPVYRRC AGDELQELAE AFDVMAATLK
DYLGQIQTAR QDMARQRQLL RTILDVTPDL VSLQDVNLVY QAANKAFCKY FNLEEKDIVG
RTDFDIFSEA QADQNYHEDK QILVTGEALS KEIAVAGERN RRWFHILKVP VYDRDRITGL
LLTARDITVV KQYQEQLVHS QKMEDLGRLA GGIAHEINTP LGIILGYTQL LLEDFEEGTQ
SRTDLETIEK QARICRKLVA DLLGFSRQSG FTRAEMELND SIREVISLVE HTFSLNKVWI
RSDFDANIPP IEADKERLKQ VWMNLFNNAF DAIGEDGFIF VRTKLCAHRR RVVVTVADTG
PGIGEDDLDK IFDPFFSTKP VGKGTGLGLS VTFGIIKDHG GRINALSPAP NEYMPSEMEE
QIQIGAGTVF IIELPVVDDV LPEDECEEAT RHVVRSEQSS A
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