Gene Dret_0229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0229 
Symbol 
ID8418033 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp287642 
End bp289747 
Gene Length2106 bp 
Protein Length701 aa 
Translation table11 
GC content58% 
IMG OID645036794 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003197109 
Protein GI258404367 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.282736 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTAGCT GGCGCTGGCC CTTTGGCCGC CTGCGTTTCC GGAGCAAACT CGGGTGGGGG 
ATGGCCGCGA TTGTTCTTGT CTTTGGCTTG CTCCTGGGGC ACCTGCTCAC GGACATGGCC
GCGCATTCCC TTCTTGAGCA GCACCACAAA CTCGGCGAGA CCGTGGCTCG CAATCTGGCG
CGACGGGCGG CGGAACCCCT GCTGGCTACG GATCTGCTCC GGCTGGAGAA TATGGTGGAT
GAAGTCACCG CCCGCACAGA AAACGCTGAG TATGCCTTTG TCGTTGACGC GGCGCACCAG
GTTTTGGCCC ATTCCTTTGA GCGCGGGTTT CCGGTTGAGC TTATTGCAGC CAATATGCCT
GAGGACAACC GCAGTCACCG TCAATTGTTG CGCAGTCAAC CCGGTTTGAT TGACGATTTT
GCCGCGCCGG TGCTTATCGA GGGTGACCGG ATCGGGTGGG TCAGGGTGGG GGTCTCCCGG
GGGGCGGTGT CCAAGACCTA TACCCGGTTG TGGATGGTCG GGCTGGGACT GACCCTTGCA
GCCATTGCCT TCGGACTGGT CCTGGTCTCC CTTTTTGCCC GAACCGTTGC CCGCCGCCTG
GCCCGGCTTC GTGATTGTGC CGAAGAAATC GTTAAAGGGA ATCTGGACGT TGTCAGCTCT
GAGGACAATC GGGTCAATTG TTGGGAAATC ATGGATTGCC AGATGGGCAA TTGCCCGGCG
TATGGGGAGA AACGGCTGCG TTGCTGGTAT CAGGCTGGTA CCCTGTGCCC CCAATGCGGT
CCGGGCGGCT ACCCCGACAA ACTTTCGTCT TGCCGCCATT GCCCGGTTTA CCGACGCTGT
GCCGGGGACG AACTCCAGGA ATTGGCCGAG GCCTTCGATG TCATGGCCGC CACGTTGAAG
GATTATTTGG GGCAGATCCA GACGGCGCGC CAGGATATGG CCCGGCAGCG GCAGTTGCTG
CGCACCATCC TCGACGTTAC CCCGGATCTG GTCAGTCTGC AGGACGTGAA TCTGGTGTAC
CAGGCCGCAA ACAAAGCGTT TTGCAAGTAT TTCAATCTCG AAGAAAAAGA CATTGTCGGC
CGGACCGATT TTGATATTTT TTCCGAAGCC CAGGCCGACC AGAACTACCA TGAAGACAAG
CAGATTCTGG TCACTGGAGA GGCGCTGTCC AAAGAGATCG CCGTGGCCGG AGAGCGCAAC
CGGCGCTGGT TCCATATTCT CAAAGTACCG GTGTACGACA GGGATCGGAT TACGGGTCTG
CTTCTCACAG CCCGGGACAT CACCGTGGTC AAGCAATACC AGGAACAACT CGTACATTCG
CAAAAAATGG AGGATCTCGG GCGGTTGGCC GGAGGGATCG CTCATGAGAT CAATACCCCT
CTGGGCATCA TCCTGGGGTA TACGCAGCTT TTGCTCGAAG ATTTCGAGGA AGGGACCCAG
AGTCGTACCG ATCTGGAAAC CATTGAGAAG CAGGCCCGGA TCTGCCGCAA GCTGGTGGCT
GATCTGCTCG GTTTTTCCCG GCAGTCGGGA TTTACCCGGG CGGAGATGGA ACTCAACGAT
TCCATTCGGG AAGTCATTTC CCTGGTCGAA CACACCTTCA GTCTGAATAA AGTCTGGATT
CGCAGTGACT TCGACGCCAA TATCCCGCCC ATCGAAGCGG ATAAGGAGCG TTTGAAACAG
GTGTGGATGA ATCTGTTCAA CAACGCCTTT GACGCCATAG GCGAGGACGG GTTTATCTTT
GTGCGCACCA AATTGTGCGC CCACAGGCGC CGGGTCGTGG TCACCGTGGC CGATACCGGT
CCCGGTATCG GGGAGGATGA TCTGGACAAG ATTTTCGATC CCTTTTTCAG TACCAAACCG
GTGGGCAAGG GAACCGGTCT GGGGCTCTCG GTGACCTTTG GGATCATCAA GGACCATGGC
GGGCGGATCA ATGCCTTGAG TCCGGCGCCC AACGAATACA TGCCCTCGGA AATGGAAGAG
CAGATTCAAA TCGGCGCTGG CACGGTGTTT ATTATCGAAT TGCCGGTGGT CGATGACGTC
TTGCCCGAAG ATGAATGCGA GGAGGCCACC CGTCATGTGG TGCGCAGCGA ACAGAGCTCT
GCATGA
 
Protein sequence
MLSWRWPFGR LRFRSKLGWG MAAIVLVFGL LLGHLLTDMA AHSLLEQHHK LGETVARNLA 
RRAAEPLLAT DLLRLENMVD EVTARTENAE YAFVVDAAHQ VLAHSFERGF PVELIAANMP
EDNRSHRQLL RSQPGLIDDF AAPVLIEGDR IGWVRVGVSR GAVSKTYTRL WMVGLGLTLA
AIAFGLVLVS LFARTVARRL ARLRDCAEEI VKGNLDVVSS EDNRVNCWEI MDCQMGNCPA
YGEKRLRCWY QAGTLCPQCG PGGYPDKLSS CRHCPVYRRC AGDELQELAE AFDVMAATLK
DYLGQIQTAR QDMARQRQLL RTILDVTPDL VSLQDVNLVY QAANKAFCKY FNLEEKDIVG
RTDFDIFSEA QADQNYHEDK QILVTGEALS KEIAVAGERN RRWFHILKVP VYDRDRITGL
LLTARDITVV KQYQEQLVHS QKMEDLGRLA GGIAHEINTP LGIILGYTQL LLEDFEEGTQ
SRTDLETIEK QARICRKLVA DLLGFSRQSG FTRAEMELND SIREVISLVE HTFSLNKVWI
RSDFDANIPP IEADKERLKQ VWMNLFNNAF DAIGEDGFIF VRTKLCAHRR RVVVTVADTG
PGIGEDDLDK IFDPFFSTKP VGKGTGLGLS VTFGIIKDHG GRINALSPAP NEYMPSEMEE
QIQIGAGTVF IIELPVVDDV LPEDECEEAT RHVVRSEQSS A