More than 300 homologs were found in PanDaTox collection
for query gene Cphy_3588 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_3588  binding-protein-dependent transport systems inner membrane component  100 
 
 
270 aa  543  1e-153  Clostridium phytofermentans ISDg  Bacteria  normal  0.143888  n/a   
 
 
-
 
NC_013530  Xcel_0919  binding-protein-dependent transport systems inner membrane component  56.06 
 
 
292 aa  310  1e-83  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.784662  n/a   
 
 
-
 
NC_013411  GYMC61_0533  binding-protein-dependent transport systems inner membrane component  50.55 
 
 
274 aa  282  4.0000000000000003e-75  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_0506  binding-protein-dependent transport systems inner membrane component  47.78 
 
 
271 aa  268  8.999999999999999e-71  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000194486  n/a   
 
 
-
 
NC_012917  PC1_0738  binding-protein-dependent transport systems inner membrane component  44.49 
 
 
270 aa  254  8e-67  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0974  binding-protein-dependent transport systems inner membrane component  44.12 
 
 
270 aa  253  2.0000000000000002e-66  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4134  binding-protein-dependent transport systems inner membrane component  45.56 
 
 
271 aa  251  1e-65  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0826  binding-protein-dependent transport systems inner membrane component  45.11 
 
 
270 aa  238  6.999999999999999e-62  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3639  monosaccharide-transporting ATPase  36.94 
 
 
292 aa  182  5.0000000000000004e-45  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2029  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
276 aa  171  1e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0827234 
 
 
-
 
NC_010717  PXO_00882  L-arabinose transport system permease protein AraQ  32.82 
 
 
278 aa  166  5e-40  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.0407955  n/a   
 
 
-
 
NC_013947  Snas_2735  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
268 aa  165  9e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.146401  normal  0.117975 
 
 
-
 
NC_012028  Hlac_2864  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
278 aa  163  3e-39  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_011071  Smal_2681  Monosaccharide-transporting ATPase  31.5 
 
 
278 aa  154  1e-36  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.515759  normal 
 
 
-
 
NC_010577  XfasM23_1548  monosaccharide-transporting ATPase  32.1 
 
 
278 aa  152  4e-36  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_013201  Hmuk_3224  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
283 aa  151  8.999999999999999e-36  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_010513  Xfasm12_1605  ABC transporter sugar permease  32.82 
 
 
278 aa  151  1e-35  Xylella fastidiosa M12  Bacteria  normal  0.732965  n/a   
 
 
-
 
NC_013521  Sked_21170  carbohydrate ABC transporter membrane protein  33.46 
 
 
302 aa  149  4e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.281989  normal  0.140209 
 
 
-
 
NC_012669  Bcav_2601  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
275 aa  149  5e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.260696  normal 
 
 
-
 
NC_011899  Hore_04290  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
297 aa  149  5e-35  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1217  binding-protein-dependent transport systems inner membrane component  30.68 
 
 
275 aa  149  5e-35  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000178765  n/a   
 
 
-
 
NC_012669  Bcav_0554  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
296 aa  149  6e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0552972  normal 
 
 
-
 
NC_014248  Aazo_3424  binding-protein-dependent transporter inner membrane protein  29.52 
 
 
277 aa  148  8e-35  'Nostoc azollae' 0708  Bacteria  normal  0.224569  n/a   
 
 
-
 
NC_010003  Pmob_0956  monosaccharide-transporting ATPase  35.41 
 
 
277 aa  147  1.0000000000000001e-34  Petrotoga mobilis SJ95  Bacteria  normal  0.0922285  n/a   
 
 
-
 
NC_007644  Moth_1482  binding-protein dependent transport system inner membrane protein  34.87 
 
 
272 aa  147  2.0000000000000003e-34  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00114182  normal 
 
 
-
 
NC_013131  Caci_5332  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
297 aa  146  3e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.195165  normal  0.550162 
 
 
-
 
NC_007413  Ava_2094  binding-protein dependent transport system inner membrane protein  30.57 
 
 
279 aa  146  4.0000000000000006e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.179988  hitchhiker  0.00000184258 
 
 
-
 
NC_010184  BcerKBAB4_2800  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
272 aa  146  4.0000000000000006e-34  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0183721  n/a   
 
 
-
 
NC_013739  Cwoe_3981  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
274 aa  145  9e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.270796  normal 
 
 
-
 
NC_013411  GYMC61_2846  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
270 aa  144  1e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008010  Dgeo_2861  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
294 aa  145  1e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.68182  n/a   
 
 
-
 
NC_012669  Bcav_3989  binding-protein-dependent transport systems inner membrane component  31.66 
 
 
324 aa  144  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1021  binding-protein-dependent transport systems inner membrane component  34.82 
 
 
246 aa  144  2e-33  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4633  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
275 aa  144  2e-33  Nocardioides sp. JS614  Bacteria  normal  0.326622  n/a   
 
 
-
 
NC_013530  Xcel_0410  Monosaccharide-transporting ATPase  31.8 
 
 
288 aa  144  2e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.727558  n/a   
 
 
-
 
NC_009767  Rcas_1881  monosaccharide-transporting ATPase  32.32 
 
 
297 aa  143  2e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.39074 
 
 
-
 
NC_014165  Tbis_0840  binding-protein-dependent transporter inner membrane component  33.08 
 
 
273 aa  143  3e-33  Thermobispora bispora DSM 43833  Bacteria  normal  0.610279  normal  0.112445 
 
 
-
 
NC_014212  Mesil_2464  binding-protein-dependent transport systems inner membrane component  30.59 
 
 
270 aa  143  4e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  0.668515  normal  0.267306 
 
 
-
 
NC_013521  Sked_07090  carbohydrate ABC transporter membrane protein  29.48 
 
 
297 aa  142  4e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.484771  normal 
 
 
-
 
NC_009832  Spro_2847  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
277 aa  142  5e-33  Serratia proteamaculans 568  Bacteria  normal  0.525559  normal  0.0514603 
 
 
-
 
NC_008541  Arth_3148  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
311 aa  142  7e-33  Arthrobacter sp. FB24  Bacteria  decreased coverage  0.00417428  n/a   
 
 
-
 
NC_012669  Bcav_3791  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
300 aa  141  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17142  normal 
 
 
-
 
NC_013526  Tter_2646  binding-protein-dependent transport systems inner membrane component  31 
 
 
275 aa  140  1.9999999999999998e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1729  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
275 aa  140  1.9999999999999998e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_1657  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
284 aa  140  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.354053  normal  0.174244 
 
 
-
 
NC_009664  Krad_3962  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
298 aa  140  3e-32  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00177289  normal  0.959368 
 
 
-
 
NC_014158  Tpau_1271  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
274 aa  139  3.9999999999999997e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06939  hypothetical protein  33.08 
 
 
294 aa  139  3.9999999999999997e-32  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_3574  Monosaccharide-transporting ATPase  31.2 
 
 
290 aa  139  4.999999999999999e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.156852  normal 
 
 
-
 
NC_002977  MCA1924  sugar ABC transporter, permease protein  31.3 
 
 
271 aa  139  6e-32  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444482  n/a   
 
 
-
 
NC_009523  RoseRS_2894  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
297 aa  138  1e-31  Roseiflexus sp. RS-1  Bacteria  normal  0.341182  normal 
 
 
-
 
NC_013526  Tter_2616  binding-protein-dependent transport systems inner membrane component  32.07 
 
 
294 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000583333  n/a   
 
 
-
 
NC_013161  Cyan8802_2285  binding-protein-dependent transport systems inner membrane component  30.95 
 
 
271 aa  137  2e-31  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00314445 
 
 
-
 
NC_013595  Sros_6586  binding-protein-dependent transport systems inner membrane component  32.81 
 
 
269 aa  137  2e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5461  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
279 aa  137  2e-31  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0512  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
298 aa  137  2e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2572  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
281 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2231  Monosaccharide-transporting ATPase  30.95 
 
 
271 aa  137  2e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0043  binding-protein-dependent transport systems inner membrane component  28.74 
 
 
270 aa  137  2e-31  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1550  MalG-type ABC sugar transport system permease component  32.58 
 
 
308 aa  137  2e-31  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7591  ABC transporter membrane spanning protein  29.89 
 
 
275 aa  136  4e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7904  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
271 aa  136  4e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0605  putative glycerol-3-phosphate ABC transporter, permease protein  33.58 
 
 
273 aa  135  5e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4734  putative glycerol-3-phosphate ABC transporter, permease protein  32.2 
 
 
273 aa  135  7.000000000000001e-31  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0286  binding-protein-dependent transport systems inner membrane component  29.17 
 
 
279 aa  135  9e-31  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.0000702238  normal  0.517324 
 
 
-
 
NC_011899  Hore_13120  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
281 aa  135  9e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0631  glycerol-3-phosphate ABC transporter, permease protein, putative  32.83 
 
 
273 aa  134  9.999999999999999e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1101  binding-protein-dependent transport systems inner membrane component  28.79 
 
 
270 aa  134  9.999999999999999e-31  Rhodoferax ferrireducens T118  Bacteria  normal  0.0164382  n/a   
 
 
-
 
NC_011898  Ccel_2110  binding-protein-dependent transport systems inner membrane component  31.87 
 
 
275 aa  135  9.999999999999999e-31  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1524  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
298 aa  134  9.999999999999999e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2023  Monosaccharide-transporting ATPase  30.57 
 
 
295 aa  135  9.999999999999999e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.0000143411  n/a   
 
 
-
 
NC_009832  Spro_2573  binding-protein-dependent transport systems inner membrane component  28.19 
 
 
272 aa  134  9.999999999999999e-31  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0699  putative glycerol-3-phosphate ABC transporter, permease protein  32.83 
 
 
273 aa  134  1.9999999999999998e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0482  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
273 aa  134  1.9999999999999998e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4239  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
268 aa  134  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1734  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
298 aa  134  1.9999999999999998e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0337575  n/a   
 
 
-
 
NC_011884  Cyan7425_4398  Monosaccharide-transporting ATPase  29.55 
 
 
281 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.000709548  normal  0.804646 
 
 
-
 
NC_013205  Aaci_0915  binding-protein-dependent transport systems inner membrane component  27.63 
 
 
280 aa  133  1.9999999999999998e-30  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_19300  carbohydrate ABC transporter membrane protein  30.59 
 
 
299 aa  134  1.9999999999999998e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  0.3396  n/a   
 
 
-
 
NC_005945  BAS0537  glycerol-3-phosphate ABC transporter permease  32.83 
 
 
273 aa  133  3e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0479  glycerol-3-phosphate ABC transporter, permease  32.83 
 
 
273 aa  133  3e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0481  glycerol-3-phosphate ABC transporter, permease  32.83 
 
 
273 aa  133  3e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0568  glycerol-3-phosphate ABC transporter permease protein  32.83 
 
 
273 aa  133  3e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0624  putative glycerol-3-phosphate ABC transporter, permease protein  32.83 
 
 
273 aa  133  3e-30  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007604  Synpcc7942_0471  ABC-type sugar transport system permease component-like  29.41 
 
 
276 aa  132  5e-30  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_05110  carbohydrate ABC transporter membrane protein  29.34 
 
 
295 aa  132  5e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6114  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
278 aa  132  5e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.834032  normal 
 
 
-
 
NC_013521  Sked_11620  ABC-type sugar transport system, permease component  29.85 
 
 
306 aa  132  6e-30  Sanguibacter keddieii DSM 10542  Bacteria  decreased coverage  0.00242068  normal  0.0915178 
 
 
-
 
NC_011661  Dtur_0383  binding-protein-dependent transport systems inner membrane component  33.49 
 
 
268 aa  132  7.999999999999999e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0525  binding-protein-dependent transport systems inner membrane component  29.5 
 
 
282 aa  132  9e-30  Petrotoga mobilis SJ95  Bacteria  normal  0.641488  n/a   
 
 
-
 
NC_010320  Teth514_1101  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
280 aa  130  2.0000000000000002e-29  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1391  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
270 aa  130  2.0000000000000002e-29  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1289  ABC transporter, permease protein  31.15 
 
 
303 aa  130  3e-29  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012848  Rleg_5052  binding-protein-dependent transport systems inner membrane component  29.81 
 
 
278 aa  129  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.482027  normal 
 
 
-
 
NC_011886  Achl_3073  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
315 aa  129  5.0000000000000004e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_0895  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
300 aa  129  6e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.150269  normal  0.306181 
 
 
-
 
NC_013595  Sros_2366  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
288 aa  129  6e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.125554  normal 
 
 
-
 
NC_011368  Rleg2_5335  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
278 aa  128  8.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.716321  normal 
 
 
-
 
NC_009921  Franean1_3946  binding-protein-dependent transport systems inner membrane component  29.12 
 
 
297 aa  128  8.000000000000001e-29  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0330031 
 
 
-
 
NC_004116  SAG0036  sugar ABC transporter, permease protein  30.69 
 
 
276 aa  128  9.000000000000001e-29  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.385725  n/a   
 
 
-
 
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