39 homologs were found in PanDaTox collection
for query gene Rpal_1506 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1506  transcriptional regulator, XRE family  100 
 
 
78 aa  157  4e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5911  putative transcriptional regulator, XRE family  50.75 
 
 
105 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.432156 
 
 
-
 
NC_012858  Rleg_6881  transcriptional regulator, XRE family  41.03 
 
 
106 aa  65.9  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.879707  normal  0.858405 
 
 
-
 
NC_010374  M446_7049  hypothetical protein  47.14 
 
 
90 aa  61.2  0.000000005  Methylobacterium sp. 4-46  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_3182  XRE family transcriptional regulator  44.44 
 
 
217 aa  58.2  0.00000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  hitchhiker  0.0000000447184  normal  0.0403938 
 
 
-
 
NC_010505  Mrad2831_1230  helix-turn-helix domain-containing protein  42.03 
 
 
85 aa  56.2  0.0000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011888  Mnod_7736  transcriptional regulator, XRE family  47.22 
 
 
86 aa  56.2  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_5034  XRE family transcriptional regulator  40.68 
 
 
69 aa  53.5  0.0000009  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0207  XRE family transcriptional regulator  46.03 
 
 
75 aa  52  0.000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.0720343  n/a   
 
 
-
 
NC_007510  Bcep18194_A6201  XRE family transcriptional regulator  45.16 
 
 
1350 aa  50.1  0.00001  Burkholderia sp. 383  Bacteria  normal  0.692672  normal 
 
 
-
 
NC_011369  Rleg2_1214  hypothetical protein  34.94 
 
 
97 aa  47.8  0.00005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1498  hypothetical protein  44.12 
 
 
85 aa  47.4  0.00006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.152901  normal  0.507716 
 
 
-
 
NC_012850  Rleg_1303  hypothetical protein  34.94 
 
 
97 aa  47.8  0.00006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.840388  normal 
 
 
-
 
NC_009636  Smed_1298  hypothetical protein  38.96 
 
 
90 aa  47.4  0.00007  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010507  Mrad2831_6546  XRE family transcriptional regulator  39.44 
 
 
79 aa  47  0.00009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.188635  n/a   
 
 
-
 
NC_009621  Smed_5419  hypothetical protein  38.89 
 
 
82 aa  46.2  0.0002  Sinorhizobium medicae WSM419  Bacteria  normal  0.277683  normal  0.663119 
 
 
-
 
NC_009484  Acry_1818  hypothetical protein  36.23 
 
 
75 aa  45.8  0.0002  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2170  hypothetical protein  40.58 
 
 
82 aa  45.8  0.0002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011892  Mnod_8419  transcriptional regulator, XRE family  40 
 
 
490 aa  45.8  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.310516  n/a   
 
 
-
 
NC_010172  Mext_2449  hypothetical protein  38.67 
 
 
88 aa  45.8  0.0002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_1704  hypothetical protein  33.33 
 
 
100 aa  46.2  0.0002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7220  transcriptional regulator, XRE family  38.57 
 
 
82 aa  45.8  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0596093  n/a   
 
 
-
 
NC_009507  Swit_5392  XRE family transcriptional regulator  40.48 
 
 
107 aa  45.1  0.0004  Sphingomonas wittichii RW1  Bacteria  normal  0.6376  normal 
 
 
-
 
NC_009505  BOV_0256  hypothetical protein  38.03 
 
 
81 aa  44.7  0.0005  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011760  Mchl_5749  hypothetical protein  39.47 
 
 
93 aa  43.9  0.0007  Methylobacterium chloromethanicum CM4  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_0615  XRE family transcriptional regulator  39.74 
 
 
85 aa  43.9  0.0008  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0174631 
 
 
-
 
NC_010505  Mrad2831_1805  hypothetical protein  40 
 
 
97 aa  43.5  0.0009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00848511 
 
 
-
 
NC_010505  Mrad2831_0389  XRE family transcriptional regulator  39.44 
 
 
359 aa  43.1  0.001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2596  transcriptional regulator, XRE family  37.84 
 
 
84 aa  43.5  0.001  Methylobacterium populi BJ001  Bacteria  normal  0.205995  normal 
 
 
-
 
NC_008686  Pden_1517  XRE family transcriptional regulator  41.67 
 
 
85 aa  43.1  0.001  Paracoccus denitrificans PD1222  Bacteria  normal  0.788491  normal  0.176287 
 
 
-
 
NC_010338  Caul_4179  XRE family transcriptional regulator  38.36 
 
 
92 aa  42  0.003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0603  XRE family transcriptional regulator  36.99 
 
 
78 aa  41.2  0.004  Caulobacter sp. K31  Bacteria  hitchhiker  0.000000347962  normal 
 
 
-
 
NC_010338  Caul_0399  XRE family transcriptional regulator  36.99 
 
 
78 aa  41.2  0.004  Caulobacter sp. K31  Bacteria  hitchhiker  0.0000208338  normal 
 
 
-
 
NC_013037  Dfer_1368  transcriptional regulator, XRE family  45.1 
 
 
189 aa  41.2  0.004  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000513137  normal  0.127219 
 
 
-
 
NC_004310  BR0264  hypothetical protein  37.97 
 
 
86 aa  41.2  0.005  Brucella suis 1330  Bacteria  normal  0.926101  n/a   
 
 
-
 
NC_009621  Smed_5405  XRE family transcriptional regulator  36.14 
 
 
86 aa  41.2  0.005  Sinorhizobium medicae WSM419  Bacteria  normal  0.784504  normal  0.232793 
 
 
-
 
NC_009511  Swit_3679  hypothetical protein  40.51 
 
 
83 aa  41.2  0.005  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2598  putative PAS/PAC sensor protein  40.58 
 
 
188 aa  40.4  0.009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1557  transcriptional regulator, XRE family  39.39 
 
 
90 aa  40  0.01  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.684199  n/a   
 
 
-
 
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