56 homologs were found in PanDaTox collection
for query gene Rpal_0725 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011004  Rpal_0725  benzoyl-CoA reductase, subunit B  100 
 
 		 436 aa  910    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0743165  n/a   
 
 
-
 
NC_011662  Tmz1t_2950  benzoyl-CoA reductase, subunit B  75.06 
 
 		 432 aa  706    Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
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NC_007925  RPC_1028  benzoyl-CoA reductase, subunit B  94.27 
 
 		 436 aa  870    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.659729  normal  1 
 
 
-
 
NC_007958  RPD_1537  benzoyl-CoA reductase, subunit B  94.5 
 
 		 436 aa  874    Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_3453  2-hydroxyglutaryl-CoA dehydratase D-component  31.97 
 
 		 409 aa  188  2e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010814  Glov_2400  2-hydroxyglutaryl-CoA dehydratase D-component  29.16 
 
 		 425 aa  179  1e-43  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_0931  2-hydroxyglutaryl-CoA dehydratase D-component  30.95 
 
 		 419 aa  159  1e-37  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_2867  Benzoyl-CoA reductase  27.1 
 
 		 415 aa  157  3e-37  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_011146  Gbem_1413  2-hydroxyglutaryl-CoA dehydratase D-component  28.35 
 
 		 415 aa  152  2e-35  Geobacter bemidjiensis Bem  Bacteria  normal  0.657921  n/a   
 
 
-
 
NC_009943  Dole_1685  2-hydroxyglutaryl-CoA dehydratase D-component  26.41 
 
 		 424 aa  138  3.0000000000000003e-31  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000455282  n/a   
 
 
-
 
NC_011899  Hore_16080  2-hydroxyglutaryl-CoA dehydratase D-component  24.14 
 
 		 426 aa  91.7  2e-17  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_1746  2-hydroxyglutaryl-CoA dehydratase D-component  25.27 
 
 		 408 aa  84  0.000000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_1771  2-hydroxyglutaryl-CoA dehydratase D-component  22.71 
 
 		 419 aa  79.7  0.00000000000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.433973 
 
 
-
 
NC_007644  Moth_1006  2-hydroxyglutaryl-CoA dehydratase, D-component  23.5 
 
 		 421 aa  77  0.0000000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0695891  hitchhiker  0.000177823 
 
 
-
 
NC_011146  Gbem_2040  2-hydroxyglutaryl-CoA dehydratase D-component  23.6 
 
 		 401 aa  70.5  0.00000000006  Geobacter bemidjiensis Bem  Bacteria  normal  0.921137  n/a   
 
 
-
 
NC_011832  Mpal_1147  2-hydroxyglutaryl-CoA dehydratase D-component  22.3 
 
 		 393 aa  66.2  0.000000001  Methanosphaerula palustris E1-9c  Archaea  normal  0.132933  normal  1 
 
 
-
 
NC_014150  Bmur_0617  2-hydroxyglutaryl-CoA dehydratase D-component  22.93 
 
 		 384 aa  64.3  0.000000004  Brachyspira murdochii DSM 12563  Bacteria  normal  1  n/a   
 
 
-
 
NC_013517  Sterm_1694  2-hydroxyglutaryl-CoA dehydratase D-component  23.76 
 
 		 382 aa  63.2  0.00000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_1899  2-hydroxyglutaryl-CoA dehydratase, D-component  21.53 
 
 		 416 aa  62.4  0.00000001  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_1329  2-hydroxyglutaryl-CoA dehydratase, D-component  23.02 
 
 		 373 aa  60.8  0.00000005  Methanococcus maripaludis C5  Archaea  normal  0.360165  n/a   
 
 
-
 
NC_007644  Moth_1446  2-hydroxyglutaryl-CoA dehydratase, D-component  22.06 
 
 		 381 aa  59.7  0.0000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.629308  normal  0.054659 
 
 
-
 
NC_002939  GSU2519  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  22.89 
 
 		 387 aa  58.9  0.0000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.321633  n/a   
 
 
-
 
NC_009634  Mevan_1356  2-hydroxyglutaryl-CoA dehydratase D-component  23.3 
 
 		 373 aa  58.5  0.0000002  Methanococcus vannielii SB  Archaea  normal  0.0888918  n/a   
 
 
-
 
NC_009975  MmarC6_0607  2-hydroxyglutaryl-CoA dehydratase D-component  22.62 
 
 		 373 aa  57.8  0.0000004  Methanococcus maripaludis C6  Archaea  normal  0.422107  n/a   
 
 
-
 
NC_009637  MmarC7_1346  2-hydroxyglutaryl-CoA dehydratase D-component  22.74 
 
 		 373 aa  55.8  0.000002  Methanococcus maripaludis C7  Archaea  normal  0.922776  normal  0.0249494 
 
 
-
 
NC_009802  CCC13826_1134  UDP-MurNac-pentapeptide presynthetase  22.42 
 
 		 385 aa  55.5  0.000002  Campylobacter concisus 13826  Bacteria  normal  0.207036  n/a   
 
 
-
 
NC_012034  Athe_0199  2-hydroxyglutaryl-CoA dehydratase D-component  20 
 
 		 416 aa  54.7  0.000003  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000602439  n/a   
 
 
-
 
NC_009975  MmarC6_1821  2-hydroxyglutaryl-CoA dehydratase D-component  23.32 
 
 		 373 aa  54.7  0.000003  Methanococcus maripaludis C6  Archaea  normal  1  n/a   
 
 
-
 
NC_007925  RPC_2056  2-hydroxyglutaryl-CoA dehydratase, D-component  22.29 
 
 		 405 aa  54.7  0.000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.727818 
 
 
-
 
NC_013385  Adeg_1707  2-hydroxyglutaryl-CoA dehydratase D-component  20.73 
 
 		 415 aa  53.1  0.00001  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009715  CCV52592_0873  2-hydroxyglutaryl-CoA dehydratase, D-component  21.3 
 
 		 385 aa  52.4  0.00001  Campylobacter curvus 525.92  Bacteria  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_0834  2-hydroxyglutaryl-CoA dehydratase, D-component  21.82 
 
 		 373 aa  53.1  0.00001  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_009253  Dred_1278  2-hydroxyglutaryl-CoA dehydratase, D-component  22.62 
 
 		 385 aa  51.2  0.00004  Desulfotomaculum reducens MI-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_1465  2-hydroxyglutaryl-CoA dehydratase D-component  23.34 
 
 		 369 aa  50.8  0.00004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008346  Swol_0427  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  23.35 
 
 		 382 aa  50.8  0.00004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_011883  Ddes_0545  2-hydroxyglutaryl-CoA dehydratase D-component  21.15 
 
 		 379 aa  50.8  0.00005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_0387  2-hydroxyglutaryl-CoA dehydratase D-component  21.89 
 
 		 426 aa  50.8  0.00005  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_3161  2-hydroxyglutaryl-CoA dehydratase, D-component  21.66 
 
 		 382 aa  50.4  0.00006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009637  MmarC7_0081  2-hydroxyglutaryl-CoA dehydratase D-component  22.04 
 
 		 373 aa  50.1  0.00007  Methanococcus maripaludis C7  Archaea  hitchhiker  0.00790728  hitchhiker  0.00027984 
 
 
-
 
NC_007644  Moth_1418  2-hydroxyglutaryl-CoA dehydratase, D-component  22.14 
 
 		 436 aa  49.7  0.0001  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00133287  normal  0.906732 
 
 
-
 
NC_009634  Mevan_1623  2-hydroxyglutaryl-CoA dehydratase D-component  21.16 
 
 		 373 aa  48.9  0.0002  Methanococcus vannielii SB  Archaea  decreased coverage  0.000208392  n/a   
 
 
-
 
NC_013165  Shel_26180  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  21.91 
 
 		 384 aa  48.1  0.0003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_2770  2-hydroxyglutaryl-CoA dehydratase D-component  22.66 
 
 		 466 aa  47.8  0.0004  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009712  Mboo_0863  2-hydroxyglutaryl-CoA dehydratase, D-component  23.59 
 
 		 426 aa  47.8  0.0004  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.0455624  normal  1 
 
 
-
 
NC_011830  Dhaf_3912  2-hydroxyglutaryl-CoA dehydratase D-component  22.2 
 
 		 384 aa  47.4  0.0005  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_010718  Nther_0828  2-hydroxyglutaryl-CoA dehydratase D-component  20.41 
 
 		 393 aa  47.4  0.0005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  hitchhiker  0.0000331904 
 
 
-
 
NC_009943  Dole_0892  2-hydroxyglutaryl-CoA dehydratase D-component  21.41 
 
 		 481 aa  47.4  0.0005  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009712  Mboo_0866  2-hydroxyglutaryl-CoA dehydratase, D-component  23.76 
 
 		 383 aa  46.6  0.0008  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.327302  normal  1 
 
 
-
 
NC_008346  Swol_0412  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  21.79 
 
 		 424 aa  46.6  0.001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_0119  2-hydroxyglutaryl-CoA dehydratase D-component  21.18 
 
 		 424 aa  45.4  0.002  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000350126  normal  0.0170821 
 
 
-
 
NC_013165  Shel_25330  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  20.39 
 
 		 390 aa  45.8  0.002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  0.8257 
 
 
-
 
NC_013165  Shel_25470  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  22.47 
 
 		 425 aa  44.7  0.003  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013170  Ccur_11360  Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB  22.74 
 
 		 426 aa  44.7  0.004  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.390545  normal  0.8731 
 
 
-
 
NC_011830  Dhaf_1100  2-hydroxyglutaryl-CoA dehydratase D-component  19.77 
 
 		 436 aa  44.3  0.004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011769  DvMF_0986  2-hydroxyglutaryl-CoA dehydratase D-component  20 
 
 		 379 aa  44.3  0.004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.345407 
 
 
-
 
NC_011832  Mpal_1311  2-hydroxyglutaryl-CoA dehydratase D-component  20.54 
 
 		 388 aa  43.9  0.006  Methanosphaerula palustris E1-9c  Archaea  normal  0.522959  normal  1 
 
 
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