27 homologs were found in PanDaTox collection
for query gene RPC_2056 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007925  RPC_2056  2-hydroxyglutaryl-CoA dehydratase, D-component  100 
 
 		 405 aa  838    Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.727818 
 
 
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NC_010718  Nther_1771  2-hydroxyglutaryl-CoA dehydratase D-component  28.65 
 
 		 419 aa  138  1e-31  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.433973 
 
 
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NC_011899  Hore_16080  2-hydroxyglutaryl-CoA dehydratase D-component  26.17 
 
 		 426 aa  119  7e-26  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
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NC_007644  Moth_1006  2-hydroxyglutaryl-CoA dehydratase, D-component  27.29 
 
 		 421 aa  112  2.0000000000000002e-23  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0695891  hitchhiker  0.000177823 
 
 
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NC_011661  Dtur_1746  2-hydroxyglutaryl-CoA dehydratase D-component  23.94 
 
 		 408 aa  102  1e-20  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
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NC_013385  Adeg_1707  2-hydroxyglutaryl-CoA dehydratase D-component  23.53 
 
 		 415 aa  94  5e-18  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
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NC_010320  Teth514_1899  2-hydroxyglutaryl-CoA dehydratase, D-component  22.99 
 
 		 416 aa  93.2  8e-18  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
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NC_012034  Athe_0199  2-hydroxyglutaryl-CoA dehydratase D-component  19.95 
 
 		 416 aa  73.9  0.000000000004  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000602439  n/a   
 
 
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NC_011146  Gbem_2040  2-hydroxyglutaryl-CoA dehydratase D-component  24.37 
 
 		 401 aa  68.2  0.0000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.921137  n/a   
 
 
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NC_011883  Ddes_0545  2-hydroxyglutaryl-CoA dehydratase D-component  25.35 
 
 		 379 aa  65.9  0.000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
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NC_011830  Dhaf_3453  2-hydroxyglutaryl-CoA dehydratase D-component  21.18 
 
 		 409 aa  59.3  0.0000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
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NC_002939  GSU2519  (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative  22.41 
 
 		 387 aa  58.5  0.0000002  Geobacter sulfurreducens PCA  Bacteria  normal  0.321633  n/a   
 
 
-
 
NC_007958  RPD_1537  benzoyl-CoA reductase, subunit B  22.94 
 
 		 436 aa  57  0.0000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
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NC_002967  TDE0392  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  21.55 
 
 		 392 aa  56.6  0.0000007  Treponema denticola ATCC 35405  Bacteria  normal  1  n/a   
 
 
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NC_007925  RPC_1028  benzoyl-CoA reductase, subunit B  22.41 
 
 		 436 aa  55.8  0.000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.659729  normal  1 
 
 
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NC_008751  Dvul_0706  2-hydroxyglutaryl-CoA dehydratase, D-component  23.12 
 
 		 380 aa  55.5  0.000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.255737  normal  0.505258 
 
 
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NC_009943  Dole_1685  2-hydroxyglutaryl-CoA dehydratase D-component  19.25 
 
 		 424 aa  55.1  0.000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000455282  n/a   
 
 
-
 
NC_011004  Rpal_0725  benzoyl-CoA reductase, subunit B  22.29 
 
 		 436 aa  54.7  0.000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0743165  n/a   
 
 
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NC_011769  DvMF_0986  2-hydroxyglutaryl-CoA dehydratase D-component  25.17 
 
 		 379 aa  53.9  0.000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.345407 
 
 
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NC_011146  Gbem_1413  2-hydroxyglutaryl-CoA dehydratase D-component  21.43 
 
 		 415 aa  50.4  0.00006  Geobacter bemidjiensis Bem  Bacteria  normal  0.657921  n/a   
 
 
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NC_013216  Dtox_1465  2-hydroxyglutaryl-CoA dehydratase D-component  22.49 
 
 		 369 aa  50.4  0.00006  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
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NC_012918  GM21_2867  Benzoyl-CoA reductase  22.41 
 
 		 415 aa  48.9  0.0001  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009943  Dole_2775  2-hydroxyglutaryl-CoA dehydratase D-component  20.59 
 
 		 469 aa  48.5  0.0002  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_3161  2-hydroxyglutaryl-CoA dehydratase, D-component  23.43 
 
 		 382 aa  47.4  0.0005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008346  Swol_0412  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  21.43 
 
 		 424 aa  46.6  0.0007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
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NC_007925  RPC_2055  2-hydroxyglutaryl-CoA dehydratase, D-component  21.79 
 
 		 376 aa  45.8  0.001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.574959  normal  0.736744 
 
 
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NC_010814  Glov_0091  2-hydroxyglutaryl-CoA dehydratase D-component  22.52 
 
 		 429 aa  43.5  0.007  Geobacter lovleyi SZ  Bacteria  normal  1  n/a   
 
 
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