More than 300 homologs were found in PanDaTox collection
for query gene RPC_2397 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007925  RPC_2397  histone-like DNA-binding protein  100 
 
 		 104 aa  199  1.9999999999999998e-50  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.806116  normal  0.0757875 
 
 
-
 
NC_011004  Rpal_3302  histone family protein DNA-binding protein  91.35 
 
 		 103 aa  180  7e-45  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_2570  histone-like DNA-binding protein  95.7 
 
 		 103 aa  174  4e-43  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.153963  normal  0.195487 
 
 
-
 
NC_007958  RPD_2889  histone-like DNA-binding protein  94.62 
 
 		 103 aa  172  1.9999999999999998e-42  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.181903 
 
 
-
 
NC_007964  Nham_2223  histone-like DNA-binding protein  88.54 
 
 		 99 aa  165  2e-40  Nitrobacter hamburgensis X14  Bacteria  normal  0.167078  n/a   
 
 
-
 
NC_007406  Nwi_1892  histone-like DNA-binding protein  87.5 
 
 		 99 aa  164  2.9999999999999998e-40  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.127774  normal  0.803766 
 
 
-
 
NC_009719  Plav_0506  histone family protein DNA-binding protein  65.17 
 
 		 113 aa  117  7.999999999999999e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.424528 
 
 
-
 
NC_010580  Bind_3873  histone family protein DNA-binding protein  54.9 
 
 		 114 aa  114  6e-25  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.282183  normal  0.344124 
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  49.41 
 
 		 90 aa  85.1  3e-16  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  48.24 
 
 		 90 aa  84.3  5e-16  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  45.88 
 
 		 92 aa  84  7e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal  1 
 
 
-
 
NC_011658  BCAH187_A3778  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus cereus AH187  Bacteria  unclonable  0.000000000704337  n/a   
 
 
-
 
NC_003909  BCE_3756  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000231467  n/a   
 
 
-
 
NC_005945  BAS3574  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000000000204463  n/a   
 
 
-
 
NC_005957  BT9727_3473  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  1.59147e-20  n/a   
 
 
-
 
NC_006274  BCZK3486  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000148823  n/a   
 
 
-
 
NC_011725  BCB4264_A3827  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus cereus B4264  Bacteria  unclonable  0.00000818253  n/a   
 
 
-
 
NC_007530  GBAA_3858  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000000587043  n/a   
 
 
-
 
NC_011772  BCG9842_B1474  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus cereus G9842  Bacteria  unclonable  0.000000000112809  hitchhiker  0.00000484208 
 
 
-
 
NC_011773  BCAH820_3740  DNA-binding protein HU  48.24 
 
 		 90 aa  83.2  0.000000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000145695 
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  43.53 
 
 		 91 aa  79.3  0.00000000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal  1 
 
 
-
 
NC_007963  Csal_3249  histone-like DNA-binding protein  45.88 
 
 		 90 aa  80.1  0.00000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  44.71 
 
 		 90 aa  79.3  0.00000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  47.06 
 
 		 90 aa  79  0.00000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  47.06 
 
 		 91 aa  78.2  0.00000000000003  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_008532  STER_1175  histone-like DNA-binding protein  46.51 
 
 		 91 aa  78.2  0.00000000000003  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.000000211181  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  77.8  0.00000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal  1 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  46.15 
 
 		 98 aa  77.8  0.00000000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_010335  Caul_5182  histone family protein DNA-binding protein  50 
 
 		 92 aa  77.4  0.00000000000006  Caulobacter sp. K31  Bacteria  normal  0.022675  normal  1 
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  45.88 
 
 		 91 aa  77.4  0.00000000000006  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  45.88 
 
 		 95 aa  77.4  0.00000000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  47.06 
 
 		 90 aa  77.4  0.00000000000006  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011311  VSAL_p840_28  DNA-binding protein HU-alpha  46.51 
 
 		 91 aa  77  0.00000000000008  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  45.88 
 
 		 90 aa  77  0.00000000000009  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  77  0.00000000000009  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  77  0.00000000000009  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  76.6  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010531  Pnec_1743  histone family protein DNA-binding protein  43.53 
 
 		 106 aa  76.3  0.0000000000001  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  42.35 
 
 		 90 aa  76.3  0.0000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  47.06 
 
 		 91 aa  76.6  0.0000000000001  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  0.585838 
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  43.75 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011071  Smal_0839  histone family protein DNA-binding protein  47.06 
 
 		 90 aa  75.5  0.0000000000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0237084  normal  1 
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  47.67 
 
 		 91 aa  75.5  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  43.75 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  43.53 
 
 		 90 aa  75.5  0.0000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_009379  Pnuc_2026  histone family protein DNA-binding protein  43.53 
 
 		 106 aa  75.9  0.0000000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.00000760647  n/a   
 
 
-
 
NC_011655  BCAH187_C0183  DNA-binding protein HU 1  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000296943  hitchhiker  2.26878e-36 
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  45.88 
 
 		 90 aa  75.5  0.0000000000002  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  75.9  0.0000000000002  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  43.53 
 
 		 90 aa  75.5  0.0000000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  75.9  0.0000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010338  Caul_1806  histone family protein DNA-binding protein  46.34 
 
 		 92 aa  75.1  0.0000000000003  Caulobacter sp. K31  Bacteria  normal  1  normal  0.109803 
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_011775  BCG9842_0074  DNA-binding protein HU  45.56 
 
 		 90 aa  74.7  0.0000000000003  Bacillus cereus G9842  Bacteria  unclonable  0.00000000000481156  n/a   
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  47.06 
 
 		 91 aa  75.5  0.0000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  43.75 
 
 		 90 aa  75.5  0.0000000000003  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_70600  HU family DNA-binding protein  43.53 
 
 		 90 aa  75.1  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013206  Aaci_3021  histone family protein DNA-binding protein  41.86 
 
 		 91 aa  74.7  0.0000000000004  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_5027  histone-like DNA-binding protein  42.35 
 
 		 91 aa  74.7  0.0000000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.705107 
 
 
-
 
NC_009439  Pmen_4401  nucleoid protein HU alpha subunit  43.53 
 
 		 90 aa  74.7  0.0000000000004  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.177499 
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  47.06 
 
 		 90 aa  74.7  0.0000000000004  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  43.53 
 
 		 91 aa  74.3  0.0000000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_010338  Caul_2219  histone family protein DNA-binding protein  47.56 
 
 		 92 aa  74.3  0.0000000000005  Caulobacter sp. K31  Bacteria  normal  0.789532  normal  0.340698 
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  41.86 
 
 		 91 aa  74.3  0.0000000000005  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  43.75 
 
 		 90 aa  73.9  0.0000000000006  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_007492  Pfl01_5600  nucleoid protein HU alpha subunit  44.05 
 
 		 91 aa  74.3  0.0000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.375895  normal  1 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  45.88 
 
 		 90 aa  73.9  0.0000000000007  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  43.53 
 
 		 90 aa  73.9  0.0000000000007  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  42.35 
 
 		 90 aa  73.6  0.0000000000008  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  44.71 
 
 		 91 aa  73.6  0.0000000000008  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_004578  PSPTO_5472  DNA-binding protein HU family  42.86 
 
 		 111 aa  73.6  0.0000000000009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  43.75 
 
 		 90 aa  73.6  0.0000000000009  Dickeya dadantii Ech703  Bacteria  normal  1  n/a   
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  47.06 
 
 		 90 aa  73.6  0.0000000000009  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  45 
 
 		 90 aa  73.2  0.000000000001  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  44.71 
 
 		 90 aa  72.8  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  43.53 
 
 		 91 aa  73.6  0.000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_011311  VSAL_p840_66  DNA-binding protein HU-alpha  44.19 
 
 		 91 aa  73.2  0.000000000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0113448  n/a   
 
 
-
 
NC_012560  Avin_48480  histone-like DNA-binding protein  40.48 
 
 		 90 aa  73.2  0.000000000001  Azotobacter vinelandii DJ  Bacteria  normal  0.707299  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  42.35 
 
 		 96 aa  73.6  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal  1 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  46.25 
 
 		 90 aa  73.2  0.000000000001  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008531  LEUM_1290  nucleoid protein Hbs  44.19 
 
 		 91 aa  73.2  0.000000000001  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00000854913  n/a   
 
 
-
 
NC_009656  PSPA7_6125  putative DNA-binding protein  42.35 
 
 		 90 aa  72.8  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  44.71 
 
 		 90 aa  72.8  0.000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_008740  Maqu_3758  histone family protein DNA-binding protein  38.82 
 
 		 90 aa  72.4  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.639339  n/a   
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  47.19 
 
 		 94 aa  72  0.000000000002  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
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