More than 300 homologs were found in PanDaTox collection
for query gene Nham_2223 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_2223  histone-like DNA-binding protein  100 
 
 
99 aa  190  5e-48  Nitrobacter hamburgensis X14  Bacteria  normal  0.167078  n/a   
 
 
-
 
NC_007406  Nwi_1892  histone-like DNA-binding protein  98.99 
 
 
99 aa  189  1e-47  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.127774  normal  0.803766 
 
 
-
 
NC_011004  Rpal_3302  histone family protein DNA-binding protein  89.32 
 
 
103 aa  172  9.999999999999999e-43  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2889  histone-like DNA-binding protein  90.32 
 
 
103 aa  164  5e-40  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.181903 
 
 
-
 
NC_007778  RPB_2570  histone-like DNA-binding protein  90.32 
 
 
103 aa  163  6.9999999999999995e-40  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.153963  normal  0.195487 
 
 
-
 
NC_007925  RPC_2397  histone-like DNA-binding protein  88.51 
 
 
104 aa  149  2e-35  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.806116  normal  0.0757875 
 
 
-
 
NC_009719  Plav_0506  histone family protein DNA-binding protein  67.42 
 
 
113 aa  117  6e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.424528 
 
 
-
 
NC_010580  Bind_3873  histone family protein DNA-binding protein  56.31 
 
 
114 aa  112  1.0000000000000001e-24  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.282183  normal  0.344124 
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  52.5 
 
 
90 aa  90.5  8e-18  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_003909  BCE_3756  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000231467  n/a   
 
 
-
 
NC_011773  BCAH820_3740  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000145695 
 
 
-
 
NC_005945  BAS3574  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000000000204463  n/a   
 
 
-
 
NC_005957  BT9727_3473  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  1.59147e-20  n/a   
 
 
-
 
NC_006274  BCZK3486  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000148823  n/a   
 
 
-
 
NC_011658  BCAH187_A3778  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus cereus AH187  Bacteria  unclonable  0.000000000704337  n/a   
 
 
-
 
NC_007530  GBAA_3858  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000000587043  n/a   
 
 
-
 
NC_011772  BCG9842_B1474  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus cereus G9842  Bacteria  unclonable  0.000000000112809  hitchhiker  0.00000484208 
 
 
-
 
NC_011725  BCB4264_A3827  DNA-binding protein HU  51.25 
 
 
90 aa  88.6  2e-17  Bacillus cereus B4264  Bacteria  unclonable  0.00000818253  n/a   
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  49.41 
 
 
90 aa  88.6  3e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  48.24 
 
 
90 aa  83.6  8e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  47.5 
 
 
90 aa  83.6  9e-16  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  48.24 
 
 
91 aa  83.6  9e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  49.41 
 
 
91 aa  83.2  0.000000000000001  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  48.24 
 
 
90 aa  82.8  0.000000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  48.24 
 
 
90 aa  82.4  0.000000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  48.24 
 
 
90 aa  82  0.000000000000002  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  44.71 
 
 
90 aa  82  0.000000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  46.25 
 
 
90 aa  81.6  0.000000000000003  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  46.25 
 
 
90 aa  81.6  0.000000000000003  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  48.24 
 
 
90 aa  81.3  0.000000000000004  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  48.24 
 
 
90 aa  81.3  0.000000000000004  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  48.24 
 
 
90 aa  81.3  0.000000000000004  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  46.25 
 
 
90 aa  81.3  0.000000000000004  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011655  BCAH187_C0183  DNA-binding protein HU 1  48.24 
 
 
90 aa  80.9  0.000000000000005  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000296943  hitchhiker  2.26878e-36 
 
 
-
 
NC_011311  VSAL_p840_28  DNA-binding protein HU-alpha  47.67 
 
 
91 aa  80.9  0.000000000000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  48.24 
 
 
90 aa  80.9  0.000000000000005  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  48.24 
 
 
90 aa  80.9  0.000000000000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011775  BCG9842_0074  DNA-binding protein HU  47.78 
 
 
90 aa  80.9  0.000000000000006  Bacillus cereus G9842  Bacteria  unclonable  0.00000000000481156  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  47.5 
 
 
90 aa  80.5  0.000000000000007  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  44.71 
 
 
91 aa  80.5  0.000000000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  47.5 
 
 
90 aa  80.5  0.000000000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  48.24 
 
 
90 aa  80.5  0.000000000000007  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  43.53 
 
 
92 aa  80.1  0.000000000000009  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  46.15 
 
 
98 aa  80.1  0.000000000000009  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_008531  LEUM_1290  nucleoid protein Hbs  47.67 
 
 
91 aa  80.1  0.000000000000009  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00000854913  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  45.88 
 
 
90 aa  79.7  0.00000000000001  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007963  Csal_3249  histone-like DNA-binding protein  45.88 
 
 
90 aa  79.7  0.00000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_0765  nucleoid protein Hbs  47.06 
 
 
91 aa  79.7  0.00000000000001  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000296782  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  48.24 
 
 
91 aa  79.3  0.00000000000001  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  48.24 
 
 
90 aa  78.6  0.00000000000002  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  46.25 
 
 
90 aa  78.6  0.00000000000002  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  47.06 
 
 
95 aa  79  0.00000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  46.25 
 
 
90 aa  78.2  0.00000000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  44.19 
 
 
91 aa  78.6  0.00000000000003  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_008532  STER_1175  histone-like DNA-binding protein  46.51 
 
 
91 aa  78.6  0.00000000000003  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.000000211181  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  47.06 
 
 
91 aa  78.6  0.00000000000003  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  43.53 
 
 
96 aa  77.8  0.00000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_011311  VSAL_p840_66  DNA-binding protein HU-alpha  46.51 
 
 
91 aa  77.4  0.00000000000006  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0113448  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  47.06 
 
 
91 aa  77  0.00000000000007  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  47.5 
 
 
90 aa  77.4  0.00000000000007  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  50.67 
 
 
90 aa  77  0.00000000000008  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  44.71 
 
 
91 aa  77  0.00000000000008  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  47.67 
 
 
91 aa  76.6  0.00000000000009  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2521  DNA-binding protein HU-beta  48.31 
 
 
94 aa  77  0.00000000000009  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0944475  normal  0.0105947 
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  48.24 
 
 
90 aa  76.6  0.00000000000009  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  48.31 
 
 
94 aa  77  0.00000000000009  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  45.88 
 
 
93 aa  76.6  0.00000000000009  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  44.71 
 
 
91 aa  76.6  0.00000000000009  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  48.31 
 
 
94 aa  77  0.00000000000009  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal 
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  43.75 
 
 
90 aa  76.3  0.0000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_010335  Caul_5182  histone family protein DNA-binding protein  50 
 
 
92 aa  76.6  0.0000000000001  Caulobacter sp. K31  Bacteria  normal  0.022675  normal 
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  45.88 
 
 
95 aa  76.3  0.0000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  47.06 
 
 
90 aa  76.3  0.0000000000001  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  47.06 
 
 
91 aa  76.6  0.0000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  46.25 
 
 
90 aa  75.9  0.0000000000002  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  47.06 
 
 
90 aa  75.9  0.0000000000002  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  46.25 
 
 
90 aa  75.9  0.0000000000002  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
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